levitsky / pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
☆126Updated last week
Alternatives and similar repositories for pyteomics:
Users that are interested in pyteomics are comparing it to the libraries listed below
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated last month
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆67Updated last week
- Python package for efficient mass spectrometry data processing and visualization☆147Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆116Updated 10 months ago
- Deep learning framework for proteomics☆122Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆85Updated last week
- Community-curated tutorials and datasets for ML in proteomics☆52Updated 3 weeks ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆63Updated last week
- A collection of available Python tools for Proteomics analysis☆56Updated 5 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆42Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- modular & open DIA search☆67Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆53Updated last week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆136Updated 2 weeks ago
- A list of tools on proteomics using deep learning☆94Updated 11 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆87Updated last month
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆209Updated 2 weeks ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆176Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆42Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Democratizing ML in proteomics☆35Updated this week
- A deep learning toolkit for mass spectrometry☆76Updated 9 months ago
- Thermo MSFileReader Python bindings☆69Updated 3 years ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆19Updated 5 months ago
- Instrument Application Programming Interface☆46Updated 2 months ago
- The Multiplierz Proteomics Library☆24Updated 11 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆48Updated last month
- Matthew The's implementation of MaRaCluster☆11Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year