levitsky / pyteomicsLinks
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
☆129Updated last week
Alternatives and similar repositories for pyteomics
Users that are interested in pyteomics are comparing it to the libraries listed below
Sorting:
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆70Updated 2 weeks ago
- Python package for efficient mass spectrometry data processing and visualization☆152Updated 3 months ago
- Deep learning framework for proteomics☆128Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 3 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆88Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated this week
- A list of tools on proteomics using deep learning☆97Updated last year
- Democratizing ML in proteomics☆37Updated 3 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated 2 weeks ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆66Updated last month
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆176Updated last year
- modular & open DIA search☆73Updated this week
- ☆38Updated 4 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆146Updated last week
- A deep learning toolkit for mass spectrometry☆81Updated 11 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated 2 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- A collection of available Python tools for Proteomics analysis☆58Updated 6 years ago
- Matthew The's implementation of MaRaCluster☆11Updated 2 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆28Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 4 months ago
- ☆20Updated 5 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆47Updated 4 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆91Updated 3 months ago
- The Multiplierz Proteomics Library☆24Updated last year
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆221Updated last week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆216Updated 3 weeks ago
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆49Updated last month