Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
☆161Aug 26, 2026Updated this week
Alternatives and similar repositories for pyteomics
Users that are interested in pyteomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated last month
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- Python package for efficient mass spectrometry data processing and visualization☆169Aug 18, 2026Updated last week
- EuBIC 2023 developer's meeting☆13Jan 16, 2023Updated 3 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆246Jul 8, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis …☆318Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Updated this week
- Democratizing ML in proteomics☆57Updated this week
- Deep learning framework for proteomics☆156Jul 30, 2026Updated last month
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆56Aug 21, 2026Updated last week
- HUPO-PSI Standardized peptidoform notation☆26Aug 14, 2026Updated 2 weeks ago
- ☆35Updated this week
- ☆17Jul 20, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆267Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Aug 5, 2026Updated 3 weeks ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 3 years ago
- ☆16May 27, 2026Updated 3 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 2 months ago
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆115Updated this week
- A deep learning toolkit for mass spectrometry☆95Aug 16, 2026Updated 2 weeks ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆47Jun 12, 2026Updated 2 months ago
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆52Apr 9, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆33Mar 27, 2026Updated 5 months ago
- ☆17Apr 27, 2022Updated 4 years ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆474Jun 30, 2026Updated 2 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 9 months ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Aug 17, 2026Updated last week
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆193Apr 19, 2024Updated 2 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated 3 weeks ago
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 3 months ago
- ☆37Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 4 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆197Updated this week
- An open-source Python package to unify raw MS data accession and storage.☆34Updated this week
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆132Mar 23, 2026Updated 5 months ago
- A cross-platform proteomics data analysis suite☆317Aug 7, 2026Updated 3 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 5 months ago