levitsky / pyteomicsLinks
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
☆141Updated last week
Alternatives and similar repositories for pyteomics
Users that are interested in pyteomics are comparing it to the libraries listed below
Sorting:
- Python package for efficient mass spectrometry data processing and visualization☆157Updated 7 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- Deep learning framework for proteomics☆132Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated 2 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆180Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- Democratizing ML in proteomics☆43Updated 2 months ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- A list of tools on proteomics using deep learning☆106Updated last year
- ☆42Updated 7 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- A collection of available Python tools for Proteomics analysis☆61Updated 6 years ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆226Updated this week
- modular & open DIA search☆80Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated last month
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- pymzML - an interface between Python and mzML Mass spectrometry Files☆176Updated 2 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated this week
- Matthew The's implementation of MaRaCluster☆11Updated 4 months ago
- A deep learning toolkit for mass spectrometry☆82Updated last year
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆163Updated this week
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 4 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 months ago
- Python framework for Deep Learning in Proteomics☆31Updated 2 months ago
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆233Updated 3 weeks ago
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆90Updated 2 years ago
- ☆63Updated 7 months ago