Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
☆161Jun 25, 2026Updated this week
Alternatives and similar repositories for pyteomics
Users that are interested in pyteomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jun 19, 2026Updated last week
- A Python interface to proteomics data repositories☆38Jun 19, 2025Updated last year
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 3 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Jun 22, 2026Updated last week
- EuBIC 2023 developer's meeting☆13Jan 16, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆247Jun 24, 2026Updated last week
- The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis …☆308Updated this week
- ☆31Jun 15, 2026Updated 2 weeks ago
- Deep learning framework for proteomics☆154Jun 10, 2026Updated 2 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jun 5, 2026Updated 3 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆53Updated this week
- HUPO-PSI Standardized peptidoform notation☆24Jun 9, 2026Updated 3 weeks ago
- ☆16May 27, 2026Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Jun 19, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆93Aug 17, 2023Updated 2 years ago
- ☆16Jul 20, 2022Updated 3 years ago
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆111Jun 23, 2026Updated last week
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆259Jun 22, 2026Updated last week
- Democratizing ML in proteomics☆55May 6, 2026Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆96Jun 3, 2026Updated 3 weeks ago
- An open-source Python package to unify raw MS data accession and storage.☆32Jun 2, 2026Updated 3 weeks ago
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated last month
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆52Apr 9, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Apr 27, 2022Updated 4 years ago
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆47Jun 12, 2026Updated 2 weeks ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 3 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆81Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 7 months ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆451Jun 18, 2026Updated last week
- A cross-platform proteomics data analysis suite☆304Updated this week
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jun 2, 2026Updated 3 weeks ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆187Apr 19, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Apr 11, 2026Updated 2 months ago
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated last month
- EasyPQP: Simple library generation for OpenSWATH☆11Apr 21, 2026Updated 2 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆189Updated this week
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Jun 11, 2026Updated 2 weeks ago
- ☆38Jun 23, 2026Updated last week
- Some shell scripts related to Thermo Fisher raw format conversion using msconvert☆15Feb 10, 2026Updated 4 months ago