MannLabs / directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
☆42Updated this week
Related projects ⓘ
Alternatives and complementary repositories for directlfq
- This is a collection of minimal code to visualize various aspects of proteomics data.☆67Updated 2 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆22Updated 3 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆33Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆76Updated this week
- Instrument Application Programming Interface☆44Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆45Updated this week
- Report processing and protein quantification for MS-based proteomics☆35Updated last year
- ☆31Updated last month
- Differential Expression Analysis tool box R lang package for omics data☆40Updated last week
- ☆13Updated 7 months ago
- modular & open DIA search☆51Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated 2 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆106Updated 4 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆35Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆78Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆38Updated this week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆19Updated 3 weeks ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆31Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆77Updated 7 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆55Updated last week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆59Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆30Updated 6 months ago
- Python package for investigating the structural context of PTMs☆27Updated 10 months ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆22Updated 5 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated 3 months ago
- PDV: an integrative proteomics data viewer☆44Updated 5 months ago
- R package - MSstats☆74Updated this week
- Democratizing ML in proteomics☆28Updated 2 weeks ago