Fast and accurate label-free quantification for small and very large numbers of proteomes
☆62Jul 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for directlfq
Users that are interested in directlfq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆55Updated this week
- Infrastructure of AlphaX ecosystem☆56Updated this week
- modular & open DIA search☆112Updated this week
- An open-source Python package for accurate and sensitive peptide and protein quantification.☆21Aug 1, 2026Updated last week
- An open-source Python package to unify raw MS data accession and storage.☆33Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆39Jun 3, 2026Updated 2 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆192Apr 19, 2024Updated 2 years ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆471Jun 30, 2026Updated last month
- Imputing proteomics data using deep learning models☆35Jul 8, 2026Updated last month
- ☆35Jul 16, 2026Updated 3 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆88Nov 21, 2025Updated 8 months ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆16Jul 15, 2026Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 2 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆86Jan 6, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated 2 months ago
- a streamlining post Spectronaut™ DIA-MS data analysis R package☆15Jun 1, 2026Updated 2 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Aug 4, 2026Updated last week
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆30Mar 19, 2026Updated 4 months ago
- A cross-platform proteomics data analysis suite☆314Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 8 months ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated last month
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆38Jun 10, 2024Updated 2 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Jun 19, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep learning framework for proteomics☆156Jul 30, 2026Updated 2 weeks ago
- Data Processing Kitchen Sink for proteomics data☆15Jun 15, 2026Updated last month
- Create synthetic DIA LC-MS/MS for proteomics experiments☆19Mar 16, 2023Updated 3 years ago
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆22Mar 25, 2026Updated 4 months ago
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆23Updated this week
- ☆38Jul 5, 2026Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆132Mar 23, 2026Updated 4 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 4 months ago
- Differential Expression Analysis tool box R lang package for omics data☆46Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package for investigating the structural context of PTMs☆29Jan 9, 2025Updated last year
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆111Updated this week
- Library for mass spectrometry projects☆28Updated this week
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Interpretation of proteomics identification results☆55Aug 1, 2026Updated last week
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Updated this week