MannLabs / directlfqLinks
Fast and accurate label-free quantification for small and very large numbers of proteomes
☆60Updated this week
Alternatives and similar repositories for directlfq
Users that are interested in directlfq are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- modular & open DIA search☆88Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 4 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- Report processing and protein quantification for MS-based proteomics☆49Updated 2 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated 3 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last month
- Deep learning framework for proteomics☆132Updated 2 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆91Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated 2 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆76Updated last week
- PDV: an integrative proteomics data viewer☆57Updated 4 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- A list of tools on proteomics using deep learning☆106Updated last year
- ☆28Updated 5 months ago
- Democratizing ML in proteomics☆44Updated last week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated last month
- Infrastructure of AlphaX ecosystem☆49Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated 3 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 8 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆34Updated 7 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated 3 weeks ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 2 weeks ago
- A cross-platform proteomics data analysis suite☆265Updated this week
- ☆43Updated 8 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 5 months ago
- Imputing proteomics data using deep learning models☆30Updated this week