Alternatives and similar repositories for directlfq:

Users that are interested in directlfq are comparing it to the libraries listed below

• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆22Updated last month
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆45Updated this week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated 2 weeks ago
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆71Updated 3 years ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆36Updated last year
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆45Updated last month
• MannLabs / alphadia
  modular & open DIA search
  ☆57Updated this week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆40Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• gtluu / timsconvert
  ☆34Updated this week
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆110Updated 6 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆78Updated last week
• statisticalbiotechnology / diffacto
  ☆13Updated 10 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆33Updated this week
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆42Updated last week
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆30Updated 8 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated this week
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆78Updated 9 months ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆80Updated 3 months ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated last month
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆44Updated this week
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆19Updated last month
• MannLabs / timsrust
  ☆24Updated this week
• jessegmeyerlab / proteomics-tutorial
  ☆56Updated 8 months ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated last week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated last week
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆23Updated last month
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆15Updated last month
• MannLabs / pydiaid
  An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…
  ☆19Updated last month