This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
☆34Aug 4, 2023Updated 2 years ago
Alternatives and similar repositories for PredFull
Users that are interested in PredFull are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆80Jul 13, 2026Updated last week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆42Jun 10, 2026Updated last month
- ☆12Jun 13, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jul 13, 2026Updated last week
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆43Aug 22, 2019Updated 6 years ago
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- ☆16May 27, 2026Updated last month
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆194Jul 9, 2026Updated last week
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated 3 months ago
- ☆10May 8, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆18Jul 10, 2026Updated last week
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆53Nov 18, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/mstoolkit☆30Dec 1, 2025Updated 7 months ago
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated last month
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- A list of tools on proteomics using deep learning☆109May 14, 2026Updated 2 months ago
- Python package for efficient mass spectrometry data processing and visualization☆168Mar 5, 2026Updated 4 months ago
- Spectral library searching using approximate nearest neighbor techniques.☆50Feb 11, 2026Updated 5 months ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆22Aug 16, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆93Aug 17, 2023Updated 2 years ago
- Processing and analysis of proteomics data☆17Jul 6, 2026Updated 2 weeks ago
- A series of jupyter notebooks to help chemistry students learn python for analytical chemistry☆54Oct 22, 2025Updated 8 months ago
- Computational analysis for mass spectrometry-based proteomics data☆21Feb 22, 2026Updated 4 months ago
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆13Feb 8, 2021Updated 5 years ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆142May 21, 2026Updated last month
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated 2 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- A library for deisotoping and charge state deconvolution of complex mass spectra☆42Jul 30, 2025Updated 11 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Jul 10, 2026Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Updated this week
- ☆46Feb 27, 2026Updated 4 months ago
- a library for massive analyses of internal voids in biomolecules and ligand transport through them☆10Updated this week
- Deep (Transfer) Learning for Peptide Retention Time Prediction☆53Sep 17, 2021Updated 4 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Updated this week
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago