pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning
☆12Feb 8, 2021Updated 5 years ago
Alternatives and similar repositories for pDeepXL
Users that are interested in pDeepXL are comparing it to the libraries listed below
Sorting:
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated 10 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆73Jan 13, 2026Updated last month
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- mist R package files☆10May 5, 2025Updated 9 months ago
- ☆16Oct 3, 2023Updated 2 years ago
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆14May 20, 2025Updated 9 months ago
- An LC-MS/MS glycan and glycopeptide search engine☆13Sep 15, 2025Updated 5 months ago
- XiSearch☆15Jan 27, 2026Updated last month
- web based visualisation of CLMS data☆13Nov 22, 2022Updated 3 years ago
- A label free quantification tool.☆18Jan 13, 2026Updated last month
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- ☆13Jul 25, 2017Updated 8 years ago
- ☆13Mar 19, 2024Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Feb 18, 2026Updated last week
- ☆17Dec 13, 2020Updated 5 years ago
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆42Aug 22, 2019Updated 6 years ago
- ☆38Feb 18, 2026Updated last week
- ☆21Feb 14, 2025Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Oct 23, 2025Updated 4 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆143Nov 21, 2025Updated 3 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆46Jun 27, 2022Updated 3 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Feb 27, 2025Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 2 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Feb 16, 2026Updated last week
- PyTorch implementations of protein secondary structure prediction on CB513.☆16Dec 30, 2018Updated 7 years ago
- Fragment-based Molecular Expansion☆27Jan 11, 2024Updated 2 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆53Nov 18, 2021Updated 4 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- ☆28Dec 6, 2022Updated 3 years ago
- Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.☆27May 21, 2019Updated 6 years ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- ☆24Feb 26, 2023Updated 3 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆67Jan 6, 2026Updated last month
- ☆27Feb 8, 2026Updated 2 weeks ago
- An experimental framework that democratizes access to distributed serverless compute.☆25Feb 17, 2026Updated last week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆84Nov 21, 2025Updated 3 months ago
- ☆11Aug 10, 2023Updated 2 years ago
- Deep learning framework for proteomics☆145Feb 19, 2026Updated last week