EasyPQP: Simple library generation for OpenSWATH
☆11Apr 21, 2026Updated 3 months ago
Alternatives and similar repositories for easypqp
Users that are interested in easypqp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Jul 13, 2026Updated 3 weeks ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Jul 2, 2026Updated last month
- ☆32May 27, 2026Updated 2 months ago
- Collisional cross-section prediction for modified and multiconformational peptides☆14Jul 16, 2026Updated 3 weeks ago
- ☆15Jan 27, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Jul 16, 2026Updated 3 weeks ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- PeakBot - detection of chromatographic and mz profile-mode peaks in LC-HRMS data☆24Feb 9, 2022Updated 4 years ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jul 28, 2026Updated 2 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 4 months ago
- TimsR: Easy access to timsTOF Pro data from R.☆12May 11, 2021Updated 5 years ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆98Jun 3, 2026Updated 2 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- PyProphet: Semi-supervised learning and scoring of OpenSWATH results.☆31Jun 18, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Oct 23, 2022Updated 3 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆79Updated this week
- ☆16Jul 2, 2026Updated last month
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆94Nov 17, 2025Updated 8 months ago
- Open source Java library for computational proteomics☆37Apr 12, 2026Updated 3 months ago
- Report processing and protein quantification for MS-based proteomics☆56Jun 29, 2023Updated 3 years ago
- ☆49Mar 14, 2025Updated last year
- ☆35Jul 16, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python scripts to manipulate Relion tomo STAR files and much more...☆15Mar 23, 2026Updated 4 months ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆13Aug 26, 2022Updated 3 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Aug 1, 2026Updated last week
- ☆18Aug 9, 2019Updated 7 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆161Jul 22, 2026Updated 2 weeks ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 5 years ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Apr 22, 2026Updated 3 months ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆191Apr 19, 2024Updated 2 years ago
- ☆22Jun 28, 2021Updated 5 years ago
- Documentation is available here:☆26Jun 10, 2026Updated 2 months ago
- ☆22Mar 26, 2025Updated last year
- A small library to provide peak picking for software processing mass spectrometry data☆24Apr 17, 2026Updated 3 months ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated 4 months ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year