Alternatives and similar repositories for easypqp

Users that are interested in easypqp are comparing it to the libraries listed below

• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆18Updated this week
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated last month
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆24Updated last month
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• MatteoLacki / timspy
  ☆20Updated 3 years ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 4 months ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 4 years ago
• PHOENIXcenter / deeprtalign
  a deep learning-based retention time alignment tool for large cohort LC-MS data analysis
  ☆12Updated last year
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated this week
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆43Updated 2 months ago
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• orsburn / LCMSMethods
  The Git Account of LCMSMethods.org
  ☆11Updated 5 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆24Updated last month
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆30Updated 2 months ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆46Updated 3 months ago
• mafreitas / tdf2mzml
  ☆26Updated last year
• markmipt / ms1searchpy
  ☆10Updated 2 weeks ago
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated 3 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 2 months ago
• Philipbear / BUDDY_Metabolomics
  Molecular formula discovery via bottom-up MS/MS interrogation
  ☆13Updated 8 months ago
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆27Updated 2 weeks ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated last week
• gtluu / timsconvert
  ☆37Updated 2 months ago
• MannLabs / timsrust
  ☆26Updated 3 weeks ago
• abdrakhimov1 / Biosaur
  ☆14Updated 3 years ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• snijderlab / annotator
  A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.
  ☆26Updated 2 weeks ago