Alternatives and similar repositories for MSstats

Users that are interested in MSstats are comparing it to the libraries listed below

• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆39Updated 4 months ago
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆45Updated 6 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆44Updated last week
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated 11 months ago
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆46Updated 2 years ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 3 weeks ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆79Updated 3 years ago
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆93Updated 2 years ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆15Updated last month
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 3 months ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆51Updated 3 months ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• lgatto / MSnbase
  Base Classes and Functions for Mass Spectrometry and Proteomics
  ☆134Updated 3 months ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated last month
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 4 months ago
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆25Updated 3 months ago
• fgcz / rawrr
  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
  ☆57Updated last week
• jpquast / protti
  Picotti lab data analysis package.
  ☆62Updated 3 months ago
• Proteomicslab57357 / UniprotR
  Retrieving Information of Proteins from Uniprot
  ☆68Updated last year
• smith-chem-wisc / MetaNetwork
  ☆11Updated 2 years ago
• tidymass / tidymass
  tidymass
  ☆56Updated 2 months ago
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated last year
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆51Updated last month
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• MonashProteomics / FragPipe-Analyst
  Documentation is available here:
  ☆17Updated 3 weeks ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆27Updated last month
• jaspershen / metID
  Construct database and identify metabolites.
  ☆6Updated 2 years ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆24Updated last month
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆79Updated last year