BorgwardtLab / HOGImineLinks
Higher-order genetic interaction discovery with network-based biological priors.
☆13Updated last year
Alternatives and similar repositories for HOGImine
Users that are interested in HOGImine are comparing it to the libraries listed below
Sorting:
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Updated 11 months ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Updated last year
- HiDeF (Hierarchical community Decoding Framework)☆15Updated last year
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆35Updated last year
- R package for metabolic enzyme enrichment anaylsis☆12Updated 11 months ago
- ☆14Updated last year
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆29Updated 2 years ago
- Disease pathways in the human interactome☆23Updated 7 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆18Updated 2 months ago
- Hierarchical graph clustering☆38Updated 7 years ago
- Tools for building and manipulating graphs in Python☆43Updated last month
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- A software for hypergraph and multi-way network analysis 🌐☆29Updated 2 months ago
- Interpretable splicing model☆20Updated 2 years ago
- ☆26Updated 3 years ago
- topological data analysis of population-scale microbiomes☆31Updated 2 years ago
- MODIG: Integrating Multi-Omics and Multi-Dimensional Gene Network for Cancer Driver Gene Identification based on Graph Attention Network …☆12Updated 2 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Updated 2 years ago
- Hierarchical Graph Clustering using Node Pair Sampling (MLG, KDD Workshop) - Multi-scale Clustering in Graphs using Modularity (DiVA)☆14Updated 5 years ago
- Hypergraph Factorisation☆26Updated 10 months ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated last week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 4 years ago
- Effect of tokenization on transformers for biological sequence☆20Updated last year
- A unified downloader+preprocessor for cancer genomics datasets☆16Updated last year
- Codes and datasets for the paper entitle "Predicting microRNA-disease associations from lncRNA-microRNA interactions via multi-view multi…☆11Updated 5 years ago
- ☆10Updated 4 years ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆11Updated 11 months ago