Higher-order genetic interaction discovery with network-based biological priors.
☆13Feb 8, 2024Updated 2 years ago
Alternatives and similar repositories for HOGImine
Users that are interested in HOGImine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Record a window to a GIF, under Sway/Wayland☆12Sep 3, 2022Updated 3 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 3 months ago
- Stackable Spring Container.☆15Sep 26, 2020Updated 5 years ago
- Approximate subgraph motif mining through learnable edge contraction.☆15Aug 3, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Python implementation of Nussinov RNA folding algorithm and recursive backtrack.☆10Oct 29, 2020Updated 5 years ago
- A simple BLOSUM module for python3☆18Nov 21, 2025Updated 6 months ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆23May 8, 2026Updated 2 weeks ago
- Official Code Repository for the paper "Graph Self-supervised Learning with Accurate Discrepancy Learning" (NeurIPS 2022)☆18Oct 10, 2022Updated 3 years ago
- Rapid structure-based virtual screening for RNA targets.☆28Apr 22, 2026Updated 3 weeks ago
- A python package for showing JBrowse views☆27Jan 3, 2024Updated 2 years ago
- ☆27May 22, 2025Updated last year
- A simple pythonic interface to biomart.☆60Feb 6, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 9 months ago
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆29Jan 27, 2023Updated 3 years ago
- Official implementation of MARIO: Model Agnostic Recipe for Improving OOD Generalization of Graph Contrastive Learning☆19Jan 27, 2024Updated 2 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- [ACL 2023] Gradient Ascent Post-training Enhances Language Model Generalization☆29Sep 12, 2024Updated last year
- A Python package for gene network analysis☆33Jun 22, 2022Updated 3 years ago
- ☆13Nov 7, 2022Updated 3 years ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆13Nov 5, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- Toolkit for structure-based deep learning on RNA.☆46May 13, 2026Updated last week
- ☆11Jan 29, 2025Updated last year
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Official Pytorch implementation of NeuralWalker (ICLR 2025)☆39Jun 25, 2025Updated 10 months ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A data visualization curriculum of interactive notebooks.☆14Nov 21, 2021Updated 4 years ago
- Official repository for the paper "Partition and Code: learning how to compress graphs" (NeurIPS'21) https://arxiv.org/abs/2107.01952☆36Oct 26, 2021Updated 4 years ago
- Optimization of binding affinities in chemical space for drug discovery☆36Jan 31, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆20Nov 22, 2022Updated 3 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- ☆34Mar 1, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 months ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 10 months ago
- Protein generative model conditioned on Gene Ontology terms☆34Jul 17, 2022Updated 3 years ago
- Implementation of "Accurate classification of protein subcellular localization from high throughput microscopy images using deep learning…☆13Oct 19, 2022Updated 3 years ago