Teichlab / Pan_fetal_immuneLinks
Collection of scripts for analysis of pan fetal immune atlas
☆28Updated 3 years ago
Alternatives and similar repositories for Pan_fetal_immune
Users that are interested in Pan_fetal_immune are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- ☆60Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- Functional Inference of Gene Regulation☆49Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆63Updated 5 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆79Updated 9 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- Accurate and fast cell marker gene identification with COSG☆51Updated 3 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- ☆50Updated 5 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- ☆62Updated 6 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- ☆60Updated 2 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆34Updated 10 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year