Center-for-Health-Data-Science / scDGDLinks
This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group.
☆14Updated last year
Alternatives and similar repositories for scDGD
Users that are interested in scDGD are comparing it to the libraries listed below
Sorting:
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Conditional out-of-distribution prediction☆63Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆18Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- ☆26Updated 5 months ago
- Single-cell multi-omics integration using Optimal Transport☆47Updated 2 months ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- ☆19Updated 4 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆14Updated 5 years ago
- ☆16Updated 3 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 6 years ago
- Nonnegative spatial factorization for multivariate count data☆60Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 3 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 10 months ago
- ☆16Updated 3 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆24Updated 2 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆22Updated 8 months ago
- ☆100Updated last year
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago