Alternatives and similar repositories for Annotatability

Users that are interested in Annotatability are comparing it to the libraries listed below

• GET-Foundation / gcell
  Python playground for cell-type-specific biology
  ☆12Updated 3 weeks ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆28Updated 3 months ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 8 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆28Updated last year
• Genentech / pascient
  ☆18Updated 9 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 10 months ago
• AllonKleinLab / cospar
  ☆26Updated 2 years ago
• dpeerlab / ENVI
  ☆52Updated 4 months ago
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆13Updated last year
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆14Updated last year
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆62Updated last month
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• theislab / cross_system_integration
  ☆13Updated 5 months ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆34Updated last month
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆19Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages
  ☆34Updated last week
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆65Updated this week
• almaan / eggplant
  ☆22Updated 3 years ago
• theislab / ncem_tutorials
  ☆13Updated 3 years ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆59Updated this week
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆32Updated this week
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆29Updated last year
• theislab / multimil
  Weakly supervised learning uncovers phenotypic signatures in single-cell data
  ☆38Updated last month
• MargoKapustina / XeniumSpatialAnalysis
  R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
  ☆30Updated 9 months ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated 3 weeks ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆21Updated 7 months ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆15Updated last year
• YosefLab / velovi
  ☆41Updated 3 weeks ago