Alternatives and similar repositories for Annotatability

Users that are interested in Annotatability are comparing it to the libraries listed below

• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated last month
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆11Updated last year
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆32Updated 6 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆51Updated last week
• GET-Foundation / gcell
  Python playground for cell-type-specific biology
  ☆12Updated 3 weeks ago
• theislab / inVAE
  Invariant Representation learning
  ☆18Updated last year
• EngreitzLab / gene_network_evaluation
  Evaluation framework for computationally inferred gene networks from single-cell data.
  ☆15Updated 3 weeks ago
• dpeerlab / ENVI
  ☆50Updated 4 months ago
• theislab / cross_system_integration
  ☆13Updated last month
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆22Updated 7 months ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 4 months ago
• lamanno-epfl / velocycle
  Bayesian model for RNA velocity estimation of periodic manifolds
  ☆33Updated last year
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆14Updated last year
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 3 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆26Updated 9 months ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• AllonKleinLab / cospar
  ☆26Updated last year
• Genentech / pascient
  ☆18Updated 5 months ago
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• HiDiHlabs / SpatialLeiden
  Implementation of multiplex Leiden for analysis of spatial omics data
  ☆13Updated this week
• theislab / moslin
  Code, data and analysis for moslin.
  ☆15Updated last year
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 2 months ago
• prabhakarlab / Banksy_py
  ☆64Updated 2 months ago
• ML4BM-Lab / ELATUS
  ☆13Updated 6 months ago
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated last year
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated last week
• ajaynadig / TRADEtools
  ☆30Updated 7 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated 11 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated last month