Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which estimates annotation congruence using a rich but often overlooked signal, namely the training dynamics of a deep neural network.
☆19Jun 23, 2025Updated 10 months ago
Alternatives and similar repositories for Annotatability
Users that are interested in Annotatability are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Mar 5, 2026Updated last month
- Cross-attention-based cell-cell interaction inference from ST data.☆20Apr 2, 2026Updated last month
- scVI extension for unspliced RNA☆15May 18, 2025Updated 11 months ago
- Python playground for cell-type-specific biology☆12Apr 8, 2026Updated 3 weeks ago
- Sample representation benchmark for single-cell data☆13Aug 11, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆96Aug 12, 2024Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 5 months ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 10 months ago
- ☆27May 22, 2025Updated 11 months ago
- ☆23Jan 6, 2026Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 5 months ago
- Gene-level general linear mixed model☆24Oct 1, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆17Oct 5, 2024Updated last year
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆57Updated this week
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Apr 20, 2026Updated last week
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Apr 4, 2025Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆78Nov 13, 2025Updated 5 months ago
- ☆28Sep 29, 2025Updated 7 months ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated 2 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆21May 1, 2024Updated 2 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- Official implementation of "Discover network dynamics with neural symbolic regression"☆50Jan 6, 2026Updated 3 months ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year
- Non-parametric density inference for single-cell analysis.☆73Apr 10, 2026Updated 3 weeks ago
- ☆10Oct 31, 2023Updated 2 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- ☆24Mar 4, 2026Updated last month
- GENOT: Generative Neural Optimal Transport☆15Dec 18, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Python Modeling Interface☆14Apr 17, 2026Updated 2 weeks ago
- Universal Single-Cell Genomics Preprocessing package☆49Feb 21, 2026Updated 2 months ago
- Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)☆34Dec 10, 2025Updated 4 months ago
- ☆19May 5, 2024Updated last year
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 2 years ago
- ☆49Oct 29, 2025Updated 6 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated 9 months ago