☆14Mar 8, 2024Updated 2 years ago
Alternatives and similar repositories for cellphylo
Users that are interested in cellphylo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Feb 21, 2023Updated 3 years ago
- ☆16May 25, 2021Updated 4 years ago
- ☆28Sep 29, 2025Updated 7 months ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Jan 8, 2026Updated 3 months ago
- The scripts used for the analyses in TOME project☆24Nov 28, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆92Mar 31, 2026Updated last month
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- ☆23Apr 15, 2026Updated 2 weeks ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- A tutorial for running Tractor and Tractor-Mix on toy datasets, including step-by-step instructions for preparing data, estimating PCs an…☆11Dec 22, 2025Updated 4 months ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆16Nov 20, 2024Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 3 months ago
- ☆17Jul 12, 2024Updated last year
- ☆13Jun 17, 2021Updated 4 years ago
- Radiocarbon calibration command line tool and Haskell module☆11Nov 24, 2025Updated 5 months ago
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆10Sep 2, 2021Updated 4 years ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 6 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- ☆27May 22, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated 10 months ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated 2 years ago
- ☆87Apr 5, 2021Updated 5 years ago
- Curso de Estadística Inferencial con R by Platzi 💚☆20Sep 25, 2020Updated 5 years ago
- scPred package for cell type prediction from scRNA-seq data☆100Jan 18, 2024Updated 2 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated last month
- ☆10Dec 8, 2021Updated 4 years ago
- ggplot2 Functions to Create Tufte Style Sparklines☆13May 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28May 22, 2020Updated 5 years ago
- ☆16Sep 8, 2024Updated last year
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated last month
- ☆13Jun 15, 2024Updated last year
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Computer-Assisted Shape Classification of Archaeological Pottery Fragments☆13Feb 9, 2021Updated 5 years ago