Alternatives and similar repositories for cellphylo

Users that are interested in cellphylo are comparing it to the libraries listed below

• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated 2 months ago
• guokai8 / richR
  Function Enrichment analysis and Network construction
  ☆12Updated last month
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• guokai8 / VennDetail
  VennDetail: a bioconductor package for VennDiagram visualization and details extraction
  ☆30Updated 8 months ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆21Updated 3 months ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• plantformatics / Socrates
  ☆23Updated 10 months ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆39Updated 8 months ago
• MengjunWu / TCseq
  An R package for time course sequencing data analysis
  ☆20Updated 2 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆44Updated 9 months ago
• junjunlab / ggChIPvis
  Profile and Heatmap Visualization by Using ggplot2 and grid
  ☆11Updated 2 years ago
• remap-cisreg / ReMapEnrich
  ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…
  ☆15Updated 3 years ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆31Updated 5 years ago
• Xinglab / rMATS-long
  ☆34Updated last month
• YosefLab / ImpulseDE2
  ☆41Updated 3 years ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆22Updated 2 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆32Updated 3 years ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆16Updated 4 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 7 months ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆30Updated 3 months ago
• single-cell-genetics / limix_qtl
  ☆20Updated 5 months ago
• cziegenhain / UMIcountR
  ☆16Updated 3 years ago
• maxsonBraunLab / cutTag-pipeline
  Pipeline for Cut&Tag analysis
  ☆24Updated 8 months ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• cxli233 / ggtraces
  A tidyverse and grammar of graphics powered line traces visualizer
  ☆30Updated 4 months ago
• jsschrepping / r_docker
  Docker container for genomics analyses in R.
  ☆26Updated last year
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 9 months ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 4 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 3 years ago