valence-labs / Tx-EvaluationLinks
Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks
☆10Updated 9 months ago
Alternatives and similar repositories for Tx-Evaluation
Users that are interested in Tx-Evaluation are comparing it to the libraries listed below
Sorting:
- ☆55Updated last year
- ☆72Updated 11 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆27Updated 2 weeks ago
- ☆21Updated 6 months ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆14Updated 2 years ago
- ☆49Updated 5 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- ☆34Updated 3 weeks ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆50Updated 6 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆22Updated last month
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆29Updated 11 months ago
- Create cell sentences from sequencing data☆22Updated 11 months ago
- ☆30Updated 3 years ago
- federated learning with tabular learning☆21Updated 5 months ago
- ☆16Updated 3 months ago
- ☆15Updated 3 weeks ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated 2 months ago
- ☆19Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆13Updated 8 months ago
- ☆15Updated 3 years ago
- Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics).☆12Updated last year
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆31Updated last year
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 2 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆15Updated 9 months ago
- Learning meaningful representations of genes☆19Updated last month
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- ☆10Updated 2 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆28Updated 2 months ago