Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks
☆12Nov 5, 2024Updated last year
Alternatives and similar repositories for Tx-Evaluation
Users that are interested in Tx-Evaluation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repository for reproducing experiments from the TxPert paper☆25Mar 25, 2026Updated 3 weeks ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 8 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆36Jul 29, 2025Updated 8 months ago
- this is a file scanner that classifies locally your files and cluster them according to type, size and content (using an offline base AI …☆31Feb 21, 2026Updated last month
- Code for evaluating single cell foundation models scBERT and scGPT☆47Aug 25, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆24Updated this week
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- Train and fine-tune diffusion models. Perform image-to-image class transfer experiments.☆15Feb 13, 2025Updated last year
- ☆11Mar 23, 2024Updated 2 years ago
- ☆34Apr 15, 2025Updated last year
- SODEN: A Scalable Continuous-Time Survival Model through Ordinary Differential Equation Networks☆14Mar 2, 2023Updated 3 years ago
- Code and data for Cell-o1.☆26Sep 19, 2025Updated 6 months ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 3 weeks ago
- ☆62Apr 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…☆23Jun 16, 2017Updated 8 years ago
- Finding similarities between documents, and document search engine query language implementation☆11Dec 24, 2019Updated 6 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆39Feb 20, 2026Updated last month
- ☆17Jul 9, 2025Updated 9 months ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Jan 6, 2026Updated 3 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆59May 19, 2025Updated 10 months ago
- GENOT: Generative Neural Optimal Transport☆15Dec 18, 2024Updated last year
- ☆10Apr 5, 2024Updated 2 years ago
- ☆12Oct 12, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- [AAAI 2024] XKD: Cross-modal Knowledge Distillation with Domain Alignment for Video Representation Learning.☆16Jul 9, 2024Updated last year
- Async yahoo-finance python api with pydantic models.☆18Sep 7, 2023Updated 2 years ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 7 years ago
- NeurIPS paper 'Censored Quantile Regression Neural Networks for Distribution-Free Survival Analysis'☆11Oct 28, 2022Updated 3 years ago
- 机器学习(Machine Learning)、深度学习(Deep Learning)、对抗神经网络(GAN），图神经网络（GNN），NLP，大数据相关的发展路书(roadmap), 并附海量源码（python，pytorch）带大家消化基本知识点，突破面试，完成从新手到合格…☆10Feb 25, 2020Updated 6 years ago
- kmeans-gpu with pytorch support☆13Jul 8, 2021Updated 4 years ago
- ☆27May 22, 2025Updated 10 months ago
- I implemented in this project the first step of a known reasoning mode in AI, which is CBR (Case Based Reasoning) in a known card game ca…☆10Feb 16, 2021Updated 5 years ago
- [Python] Comparison of empirical probability distributions. Integral probability metrics (e.g. Kantorovich metric). f-divergences (e.g. K…☆11Apr 20, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Centralized library for evaluation of generated images☆19Aug 7, 2023Updated 2 years ago
- Interactive & explainable GNN for drug repurposing☆14Mar 14, 2024Updated 2 years ago
- Interesting Scientific Idea Generation Using Knowledge Graphs and LLMs: Evaluations with 100 Research Group Leaders☆33Feb 3, 2025Updated last year
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- ☆14Jul 17, 2023Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- Code for an ECCV2014 paper☆12Feb 10, 2015Updated 11 years ago