Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks
☆15Nov 5, 2024Updated last year
Alternatives and similar repositories for Tx-Evaluation
Users that are interested in Tx-Evaluation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆17Aug 9, 2025Updated 11 months ago
- A repository for reproducing experiments from the TxPert paper☆42Mar 25, 2026Updated 4 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆39Jul 29, 2025Updated last year
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 9 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆48Aug 25, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Train and fine-tune diffusion models. Perform image-to-image class transfer experiments.☆15Feb 13, 2025Updated last year
- ☆17Jan 30, 2026Updated 5 months ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- ☆18Apr 23, 2026Updated 3 months ago
- 🏃🏃 Your next-gen single-cell Foundation Model☆37Jul 18, 2026Updated last week
- ☆36Apr 15, 2025Updated last year
- SODEN: A Scalable Continuous-Time Survival Model through Ordinary Differential Equation Networks☆15Mar 2, 2023Updated 3 years ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 4 months ago
- ☆62Apr 5, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Reproducibility repository for the Human Neural Organoid Atlas publication☆51Dec 16, 2024Updated last year
- Finding similarities between documents, and document search engine query language implementation☆11Dec 24, 2019Updated 6 years ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆21Nov 29, 2025Updated 8 months ago
- MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…☆23Jun 16, 2017Updated 9 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆62May 19, 2025Updated last year
- ARIMA model practicing with C02 Emission dataset Forecasting with python☆10Dec 28, 2021Updated 4 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆40Feb 20, 2026Updated 5 months ago
- I implemented in this project the first step of a known reasoning mode in AI, which is CBR (Case Based Reasoning) in a known card game ca…☆10Feb 16, 2021Updated 5 years ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Jan 6, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Detect teeth from given images using OpenCV and Python with the help of template matching☆14Jan 4, 2018Updated 8 years ago
- ☆12Oct 12, 2021Updated 4 years ago
- Async yahoo-finance python api with pydantic models.☆18Sep 7, 2023Updated 2 years ago
- [AAAI 2024] XKD: Cross-modal Knowledge Distillation with Domain Alignment for Video Representation Learning.☆15Jul 9, 2024Updated 2 years ago
- this is a file scanner that classifies locally your files and cluster them according to type, size and content (using an offline base AI …☆33Feb 21, 2026Updated 5 months ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- ☆11Apr 5, 2024Updated 2 years ago
- ☆13Mar 23, 2024Updated 2 years ago
- 机器学习(Machine Learning)、深度学习(Deep Learning)、对抗神经网络(GAN),图神经网络(GNN),NLP,大数据相关的发展路书(roadmap), 并附海量源码(python,pytorch)带大家消化基本知识点,突破面试,完成从新手到合格…☆10Feb 25, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆14Jul 13, 2022Updated 4 years ago
- Centralized library for evaluation of generated images☆19Aug 7, 2023Updated 2 years ago
- NeurIPS paper 'Censored Quantile Regression Neural Networks for Distribution-Free Survival Analysis'☆12Oct 28, 2022Updated 3 years ago
- ☆11Jan 15, 2021Updated 5 years ago
- MCP server for Open Targets data☆19May 15, 2026Updated 2 months ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- ☆27May 22, 2025Updated last year