caleblareau / mitoblacklistLinks
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
☆19Updated 2 years ago
Alternatives and similar repositories for mitoblacklist
Users that are interested in mitoblacklist are comparing it to the libraries listed below
Sorting:
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- ☆32Updated 4 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆34Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆18Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆17Updated last year
- ☆49Updated 10 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆24Updated 5 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- scover☆23Updated last year
- binned motif enrichment analysis and visualisation☆40Updated last month
- ☆20Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- simplified cellranger for long-read data☆19Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- ☆17Updated 4 years ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 3 weeks ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 4 months ago