caleblareau / mitoblacklist
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
☆18Updated 2 years ago
Alternatives and similar repositories for mitoblacklist:
Users that are interested in mitoblacklist are comparing it to the libraries listed below
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆18Updated last month
- ☆29Updated 4 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆20Updated last year
- scover☆22Updated last year
- ☆45Updated 5 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 years ago
- ☆31Updated 8 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆15Updated 3 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 5 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 7 months ago
- Statistically Significant loops from HiChIP data☆39Updated 9 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- ☆12Updated 6 months ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆30Updated 3 years ago
- ☆29Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆13Updated last year
- ☆16Updated 6 months ago
- ☆15Updated 7 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year