caleblareau / mitoblacklist
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
☆19Updated 2 years ago
Alternatives and similar repositories for mitoblacklist:
Users that are interested in mitoblacklist are comparing it to the libraries listed below
- ☆30Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 weeks ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆47Updated 8 months ago
- Bead-based single-cell atac processing☆32Updated 3 years ago
- ☆17Updated 10 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- scover☆23Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- ☆33Updated 11 months ago
- interactive visualization of single-cell transcriptomes☆11Updated last year
- binned motif enrichment analysis and visualisation☆40Updated 3 weeks ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- ☆17Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 11 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 10 months ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆20Updated last year
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated 2 months ago