caleblareau / mitoblacklistLinks
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
☆22Updated 3 years ago
Alternatives and similar repositories for mitoblacklist
Users that are interested in mitoblacklist are comparing it to the libraries listed below
Sorting:
- scover☆24Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- TF analysis from epigenetic and Hi-C data☆19Updated 10 months ago
- binned motif enrichment analysis and visualisation☆45Updated 2 weeks ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- ☆12Updated 6 years ago
- ☆18Updated last year
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- ☆28Updated 7 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago