caleblareau / mitoblacklistLinks
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
☆20Updated 3 years ago
Alternatives and similar repositories for mitoblacklist
Users that are interested in mitoblacklist are comparing it to the libraries listed below
Sorting:
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 4 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆24Updated 9 months ago
- ☆49Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆32Updated 7 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 3 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- ☆20Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- scover☆23Updated last year
- TF analysis from epigenetic and Hi-C data☆17Updated 4 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- ☆17Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Transposable element databases☆13Updated 3 years ago
- ☆19Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆41Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago