Alternatives and similar repositories for bulkDGD

Users that are interested in bulkDGD are comparing it to the libraries listed below

• xiongxslab / Translatomer
  ☆23Updated 6 months ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated last year
• mhorlacher / rbpnet
  ☆18Updated last year
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆35Updated 5 months ago
• visze / sequence_cnn_models
  ☆13Updated 7 months ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆29Updated 7 months ago
• kaitlin309 / PRIESSTESS
  ☆12Updated 2 weeks ago
• liu-bioinfo-lab / EPCOT
  ☆24Updated last year
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated 9 months ago
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆33Updated last month
• y9c / m6A-SACseq
  🧪 Optimized protocol for m6A-SAC-seq
  ☆11Updated 2 months ago
• suinleelab / PAUSE
  Code for paper "Principled feature attribution for unsupervised gene expression analysis"
  ☆12Updated 2 years ago
• popitsch / rnalib
  rnalib: a python-based transcriptomics library
  ☆11Updated 3 months ago
• Illumina / PromoterAI
  ☆74Updated 2 months ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 5 months ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆70Updated 9 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• lhy0322 / BertSNR
  BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…
  ☆12Updated 3 months ago
• MarieOestreich / hCoCena
  ☆16Updated 6 months ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆25Updated 2 years ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆72Updated 2 months ago
• Weeks-UNC / RNAvigate
  Very flexible tools for plotting and analyzing all kinds of RNA structure data
  ☆13Updated 2 months ago
• mostafavilabuw / EnformerAssessment
  ☆24Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 5 months ago
• chengl7-lab / kmap
  A tool for visualising kmers in 2D space.
  ☆10Updated 6 months ago
• fratajcz / speos
  A positive-unlabeled ensemble learning framework for disease gene prioritization.
  ☆20Updated 2 weeks ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆44Updated 9 months ago
• kundajelab / DART-Eval
  ☆40Updated last month