Alternatives and similar repositories for IntegrAO:

Users that are interested in IntegrAO are comparing it to the libraries listed below

• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆51Updated last week
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆63Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆36Updated 2 years ago
• LieberInstitute / INTERACT
  ☆11Updated 2 years ago
• DanHanh / scLinear
  ☆19Updated 9 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆56Updated 2 weeks ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆52Updated 6 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 2 months ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆22Updated 8 months ago
• cellatlas / human
  ☆42Updated 5 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆102Updated 2 years ago
• CompEpigen / methylbert
  A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
  ☆27Updated last month
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated this week
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆58Updated last week
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆61Updated last year
• devCellPy-Team / devCellPy
  devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
  ☆25Updated last year
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆28Updated 3 weeks ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆26Updated 3 weeks ago
• TencentAILabHealthcare / scTranslator
  ☆36Updated 8 months ago
• scverse / muon-tutorials
  Tutorials for multimodal omics data analysis
  ☆14Updated last month
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 6 months ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆56Updated 10 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆33Updated 5 years ago
• mhorlacher / rbpnet
  ☆18Updated last year
• BGIResearch / BioLLM
  ☆20Updated last week
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆98Updated last week
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆74Updated 9 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆68Updated this week
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆43Updated last week