bowang-lab / IntegrAOLinks
Integrate Any Omics: Towards genome-wide data integration for patient stratification
☆58Updated 7 months ago
Alternatives and similar repositories for IntegrAO
Users that are interested in IntegrAO are comparing it to the libraries listed below
Sorting:
- ☆98Updated 2 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆52Updated 5 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆98Updated 2 months ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- Tutorials for multimodal omics data analysis☆19Updated 10 months ago
- The code for gene set analysis by accessing domain databases☆93Updated 3 weeks ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆178Updated last month
- Computational Optimization of DNA Activity (CODA)☆67Updated 9 months ago
- LLM agents for working with the SRA and associated bioinformatics databases.☆142Updated 2 months ago
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆89Updated last year
- ☆70Updated last week
- Code for paper "A deep profile of gene expression across 18 human cancers"☆30Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆58Updated 7 months ago
- bioinformatics plotting and tools☆59Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 9 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆77Updated 10 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- 🏃 The go-to single-cell Foundation Model☆128Updated 3 weeks ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 2 months ago
- ☆87Updated last month
- ☆60Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆38Updated 9 months ago
- Create cell sentences from sequencing data☆23Updated last year
- ☆151Updated last year
- Multi-modal single cell analysis pipelines☆62Updated last month
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆28Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated last month
- pytorch dataloaders for single-cell perturbation data☆40Updated last month