Alternatives and similar repositories for IntegrAO

Users that are interested in IntegrAO are comparing it to the libraries listed below

• czi-ai / transcriptformer
  ☆87Updated 2 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆91Updated this week
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 2 months ago
• ncbi-nlp / GeneAgent
  The code for gene set analysis by accessing domain databases
  ☆81Updated last month
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆64Updated 6 months ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆74Updated 7 months ago
• Illumina / PromoterAI
  ☆80Updated 4 months ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆33Updated 7 months ago
• scverse / muon-tutorials
  Tutorials for multimodal omics data analysis
  ☆17Updated 7 months ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆35Updated 6 months ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆63Updated 2 weeks ago
• DanHanh / scLinear
  ☆19Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆56Updated 3 months ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆29Updated 11 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• ArcInstitute / SRAgent
  LLM agents for working with the SRA and associated bioinformatics databases.
  ☆131Updated 2 weeks ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆48Updated 2 weeks ago
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆126Updated 2 years ago
• altoslabs / perturbench
  ☆43Updated last week
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated last year
• theislab / vevo_Tahoe_100m_analysis
  ☆30Updated 5 months ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• zou-group / CellVoyager
  ☆93Updated last month
• devCellPy-Team / devCellPy
  devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
  ☆26Updated last year
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆88Updated 11 months ago
• QuKunLab / MultiomeBenchmarking
  ☆49Updated 7 months ago
• biagent-dev / bia
  BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow
  ☆39Updated last year
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆23Updated 3 months ago