Alternatives and similar repositories for SpottedPy

Users that are interested in SpottedPy are comparing it to the libraries listed below

• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆46Updated 5 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆32Updated 6 months ago
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆54Updated last year
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆39Updated 2 months ago
• yunguan-wang / Spacia
  ☆30Updated 9 months ago
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆32Updated last month
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 5 months ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 3 months ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆30Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆24Updated 4 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆100Updated last year
• theislab / multimil
  Weakly supervised learning uncovers phenotypic signatures in single-cell data
  ☆38Updated last month
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆25Updated last year
• jbergenstrahle / STUtility
  ☆53Updated 2 years ago
• Teichlab / visium_stitcher
  Stitch multiple Visium slides together
  ☆16Updated 3 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 10 months ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆23Updated 7 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated 2 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated last week
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆70Updated 2 months ago
• satijalab / panhumanpy
  ☆23Updated 4 months ago
• Teichlab / sctk
  ☆45Updated last week
• ajaynadig / TRADEtools
  ☆35Updated 10 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆22Updated 2 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆36Updated 4 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated 2 years ago