valence-labs / TxPertLinks
A repository for reproducing experiments from the TxPert paper
☆24Updated 2 weeks ago
Alternatives and similar repositories for TxPert
Users that are interested in TxPert are comparing it to the libraries listed below
Sorting:
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated 3 weeks ago
- Contextual AI models for single-cell protein biology☆96Updated 10 months ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 9 months ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆35Updated 2 weeks ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆135Updated 10 months ago
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆29Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆100Updated 2 weeks ago
- surrogate quantitative interpretability for deepnets☆24Updated 4 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆17Updated 4 months ago
- ☆29Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆138Updated last year
- ☆21Updated 11 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆85Updated 2 weeks ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆58Updated 5 months ago
- ☆36Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆100Updated 2 months ago
- ProCyon: A multimodal foundation model for protein phenotypes☆54Updated last month
- ☆76Updated last year
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆18Updated 4 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 4 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Updated last year
- ☆30Updated 2 weeks ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆33Updated 5 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- Paper collection for single cell foundation models☆35Updated last year
- Modeling complex perturbations with CellFlow☆104Updated last week
- ☆17Updated last year