Alternatives and similar repositories for TxPert

Users that are interested in TxPert are comparing it to the libraries listed below

• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 8 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆93Updated 9 months ago
• Novartis / ChemBioMultimodalAutoencoders
  a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures
  ☆29Updated 2 years ago
• KangBoming / BulkFormer
  BulkFormer: A large-scale foundation model for human bulk transcriptomes
  ☆28Updated last month
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆42Updated last year
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆54Updated 3 months ago
• mims-harvard / PDGrapher
  Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
  ☆94Updated last month
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆22Updated last week
• mims-harvard / ProCyon
  ProCyon: A multimodal foundation model for protein phenotypes
  ☆49Updated 2 months ago
• ml-jku / cloome
  ☆36Updated last year
• jiangdada1221 / TEINet
  TEINet: a deep learning framework for prediction of TCR-epitope binding specificity
  ☆16Updated 2 years ago
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆95Updated last week
• broadinstitute / EmmaEmb
  ☆15Updated 2 months ago
• ml-jku / DNA-xLSTM
  ☆17Updated last year
• alchemab / parapred-pytorch
  PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
  ☆20Updated 2 years ago
• haiyuan-yu-lab / PIONEER
  ☆28Updated 11 months ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆134Updated last year
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆28Updated 9 months ago
• mims-harvard / Madrigal
  Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data
  ☆38Updated 3 months ago
• emyyue / BioPathNet
  Codebase for BioPathNet to predict links in biomedical knowledge graphs
  ☆14Updated 2 months ago
• theislab / IMPA
  ☆20Updated 10 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆129Updated 9 months ago
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆18Updated 3 years ago
• m42-health / biofm-eval
  Library to extract embeddings for DNA sequences using BioFM genomics foundation model
  ☆17Updated 3 months ago
• oxpig / saab_plus
  ☆26Updated 5 years ago
• recursionpharma / EFAAR_benchmarking
  External repo for the EFAAR benchmarking paper
  ☆24Updated last month
• czi-ai / transcriptformer
  ☆91Updated 2 weeks ago