A repository for reproducing experiments from the TxPert paper
☆27Mar 25, 2026Updated last month
Alternatives and similar repositories for TxPert
Users that are interested in TxPert are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆12Nov 5, 2024Updated last year
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆22Oct 29, 2024Updated last year
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆15Nov 24, 2025Updated 5 months ago
- The Polaris datasets and benchmarks recipes☆13May 26, 2025Updated 11 months ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆20Nov 29, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 8 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆567Apr 23, 2026Updated last week
- ☆82Feb 17, 2026Updated 2 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆20Nov 18, 2025Updated 5 months ago
- ☆62Jun 11, 2025Updated 10 months ago
- ☆38Apr 16, 2025Updated last year
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- Comprehensive suite for evaluating perturbation prediction models☆127Updated this week
- This is a read-only mirror of the CRAN R package repository. mixOmics — Omics Data Integration Project. Homepage: http://www.mixOmics.o…☆10Jun 1, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- this is a file scanner that classifies locally your files and cluster them according to type, size and content (using an offline base AI …☆32Feb 21, 2026Updated 2 months ago
- Pipeline to run scE2G☆41Apr 17, 2026Updated 2 weeks ago
- Functional Inference of Gene Regulation☆52Jul 5, 2024Updated last year
- Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization☆13Sep 20, 2021Updated 4 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆356Feb 1, 2025Updated last year
- Train and fine-tune diffusion models. Perform image-to-image class transfer experiments.☆15Feb 13, 2025Updated last year
- Curate datasets with ease.☆32Sep 19, 2024Updated last year
- Differential Evolution Algorithm which uses Non-dominated Sorting for Multi-Objective Optimization☆10Mar 11, 2020Updated 6 years ago
- Official repository for "Construction of Hierarchical Neural Architecture Search Spaces based on Context-free Grammars" (NeurIPS 2023)☆17Oct 26, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆26Mar 16, 2026Updated last month
- Python Fundamentals for Biologists☆40Nov 15, 2024Updated last year
- Code and data for Cell-o1.☆26Sep 19, 2025Updated 7 months ago
- singleCellNet in Python☆16Feb 25, 2026Updated 2 months ago
- Simple scVI implementation☆12Apr 27, 2026Updated last week
- Finding similarities between documents, and document search engine query language implementation☆11Dec 24, 2019Updated 6 years ago
- inference of transcription factor activity at the single cell level☆27Dec 16, 2025Updated 4 months ago
- Raman2RNA code base.☆16Sep 8, 2023Updated 2 years ago
- The official code of "Beyond Walking: A Large-Scale Image-Text Benchmark for Text-based Person Anomaly Search"☆27Sep 15, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29May 22, 2017Updated 8 years ago
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆14Oct 20, 2023Updated 2 years ago
- ☆15Dec 18, 2024Updated last year
- ☆17Jul 9, 2025Updated 9 months ago
- ☆49Jun 18, 2024Updated last year
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆27Mar 20, 2026Updated last month