mosaicMPI: mosaic multi-resolution program integration
☆12Dec 9, 2025Updated 2 months ago
Alternatives and similar repositories for mosaicMPI
Users that are interested in mosaicMPI are comparing it to the libraries listed below
Sorting:
- ☆11Aug 21, 2024Updated last year
- K-means clustering for large single-cell datasets☆12Feb 10, 2026Updated 2 weeks ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- ☆11May 5, 2023Updated 2 years ago
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 5 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 4 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- ☆19Dec 1, 2021Updated 4 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 7 months ago
- ☆19Oct 4, 2022Updated 3 years ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Oct 24, 2022Updated 3 years ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 9 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Jul 7, 2022Updated 3 years ago
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 2 weeks ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 4 years ago
- Code for WACV 2022 paper "Generalized Clustering and Multi-Manifold Learning with Geometric Structure Preservation"☆20Dec 16, 2022Updated 3 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Feature selection for preserving biological trajectories in single-cell data☆20May 29, 2025Updated 9 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated 2 weeks ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Feb 24, 2025Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- ☆20Oct 29, 2025Updated 4 months ago
- ☆31Jun 10, 2025Updated 8 months ago
- The project for analyzing differential methylation of MeRIP-seq data☆24Sep 5, 2023Updated 2 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- ☆27May 22, 2025Updated 9 months ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆62Dec 3, 2025Updated 2 months ago
- scover☆24Nov 3, 2023Updated 2 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated last year
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Oct 10, 2025Updated 4 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 8 months ago