AllonKleinLab / scrublet
Detect doublets in single-cell RNA-seq data
☆38Updated 5 years ago
Alternatives and similar repositories for scrublet:
Users that are interested in scrublet are comparing it to the libraries listed below
- ☆62Updated last year
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated last month
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated last week
- Framework for sensitive DE testing (using neighbourhoods)☆66Updated 9 months ago
- Create cisTarget databases☆50Updated 3 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆102Updated last week
- ☆60Updated 5 years ago
- R package for semi-supervised single-cell data integration☆81Updated last month
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆60Updated 4 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆69Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆94Updated last year
- ☆79Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- R package for Pathway RespOnsive GENe activity inference☆104Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 weeks ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 8 months ago
- ☆63Updated 10 months ago
- ☆105Updated last month
- Mouse cell atlas☆59Updated 5 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- ☆50Updated 7 months ago
- R package for pathway analysis in scRNA-seq data☆73Updated 8 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- ☆46Updated 2 years ago