rorymaizels / velvetVAE
Variational Estimation of Latent Velocity from Expression with Time-resolution
☆12Updated 9 months ago
Alternatives and similar repositories for velvetVAE:
Users that are interested in velvetVAE are comparing it to the libraries listed below
- ☆26Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- scVI extension for unspliced RNA☆16Updated last month
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 6 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 2 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆25Updated 3 weeks ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆32Updated 8 months ago
- Code, data and analysis for moslin.☆12Updated 5 months ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- RNA velocity validation☆23Updated 2 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆19Updated last month
- ☆20Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated last month
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- A python package for chromVAR☆27Updated last year
- Information-based dimensionality reduction☆29Updated 2 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆24Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated last week
- ☆24Updated 2 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆15Updated 3 years ago
- CAST package☆31Updated 4 months ago
- ☆39Updated this week
- Global Waddington-OT☆22Updated 6 months ago
- ☆44Updated 10 months ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆16Updated 4 years ago