rorymaizels / velvetVAELinks
Variational Estimation of Latent Velocity from Expression with Time-resolution
☆11Updated last year
Alternatives and similar repositories for velvetVAE
Users that are interested in velvetVAE are comparing it to the libraries listed below
Sorting:
- Code, data and analysis for moslin.☆14Updated 10 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 5 months ago
- scVI extension for unspliced RNA☆16Updated 3 months ago
- ☆12Updated 4 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 4 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 7 months ago
- RNA velocity validation☆22Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 4 months ago
- ☆26Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆21Updated 2 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated 11 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- ☆13Updated 5 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated 10 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆54Updated 2 years ago
- cTPnet Package☆25Updated 3 years ago
- ☆29Updated 5 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 3 years ago
- ☆18Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆22Updated last year