rorymaizels / velvetVAELinks
Variational Estimation of Latent Velocity from Expression with Time-resolution
☆13Updated last year
Alternatives and similar repositories for velvetVAE
Users that are interested in velvetVAE are comparing it to the libraries listed below
Sorting:
- scVI extension for unspliced RNA☆16Updated 7 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆23Updated 2 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- An end-to-end computational pipeline for large Perturb-seq screens☆15Updated 8 months ago
- ☆13Updated 8 months ago
- RNA velocity validation☆22Updated 3 years ago
- Code, data and analysis for moslin.☆15Updated last year
- Code for scKINETICS (ISMB 2023)☆22Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 8 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Updated 11 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- epigenome analysis to rank transcription factors☆14Updated 6 years ago
- ☆14Updated 5 years ago
- ☆26Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- cTPnet Package☆27Updated 3 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆29Updated 6 months ago
- ☆40Updated last week
- ☆35Updated 9 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆35Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- Information-based dimensionality reduction☆29Updated last year