rorymaizels / velvetVAELinks
Variational Estimation of Latent Velocity from Expression with Time-resolution
☆11Updated last year
Alternatives and similar repositories for velvetVAE
Users that are interested in velvetVAE are comparing it to the libraries listed below
Sorting:
- This repository contains codes used for the human fetal limb cell atlas.☆17Updated 7 months ago
- Code, data and analysis for moslin.☆14Updated 11 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 5 months ago
- Code for scKINETICS (ISMB 2023)☆22Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 2 weeks ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆32Updated 5 months ago
- RNA velocity validation☆22Updated 3 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆22Updated 3 months ago
- scVI extension for unspliced RNA☆16Updated 4 months ago
- ☆26Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- ☆13Updated 5 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 3 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆22Updated last year
- Information-based dimensionality reduction☆29Updated 9 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 3 years ago
- ☆10Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated 3 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- ☆29Updated 6 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago