mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization
☆24Mar 10, 2026Updated last week
Alternatives and similar repositories for mtGrasp
Users that are interested in mtGrasp are comparing it to the libraries listed below
Sorting:
- 🧬 Unique (& conserved) DNA sequence identification☆15Mar 10, 2026Updated last week
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆114Sep 2, 2025Updated 6 months ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated last month
- ☆14Oct 29, 2021Updated 4 years ago
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆17Feb 23, 2026Updated 3 weeks ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 4 months ago
- Tools for merging Tandem Repeat VCF files☆37Apr 30, 2025Updated 10 months ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated last week
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- A repository for my work on rCRUX☆12Jun 21, 2024Updated last year
- a toolbox for utilize organelle genomic data☆25Aug 7, 2025Updated 7 months ago
- A library for working with phylogenetic and population genetic data.☆66Feb 9, 2026Updated last month
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- ☆11Dec 1, 2020Updated 5 years ago
- Software for hybridization capture bait design☆11Mar 20, 2024Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Feb 12, 2026Updated last month
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 6 years ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- fastHaN is a fast and scalable program for constructing haplotype networks for large samples☆19Feb 14, 2024Updated 2 years ago
- Physalia course Machine Learning for Multi-Omics Integration☆19Jun 11, 2025Updated 9 months ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆30Jan 21, 2026Updated last month
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 6 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- An ultrafast and memory efficient tool for phylogenomics☆26Jan 31, 2026Updated last month
- Linear-time de novo Long Read Assembler☆41Updated this week
- Toolkit for untargeted metabolomics profiling☆13Aug 25, 2025Updated 6 months ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 2 years ago
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- ☆44Jan 23, 2026Updated last month
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- Single sample pathway analysis tools for omics data☆13Nov 9, 2024Updated last year