lczech / genesisLinks
A library for working with phylogenetic and population genetic data.
☆65Updated last month
Alternatives and similar repositories for genesis
Users that are interested in genesis are comparing it to the libraries listed below
Sorting:
- A toolkit for analyzing and visualizing phylogenetic placement data☆63Updated 2 months ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 7 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Updated 10 months ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- GATB Minia assembly pipeline☆31Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- just annotate it, dammit!☆93Updated 2 years ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆47Updated 5 months ago
- Reconstruction of transmission trees using genomic data☆68Updated 2 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last month
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Updated 4 months ago
- StaG Metagenomic Workflow Collaboration☆28Updated last year
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- software for UCE (and general) phylogenomics☆86Updated 3 weeks ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Sample search by metadata and features☆47Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- A set of scripts for calculating pairwise SNP distance☆43Updated 2 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 4 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆103Updated 3 weeks ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Updated 11 months ago