lczech / genesisLinks
A library for working with phylogenetic and population genetic data.
☆64Updated last week
Alternatives and similar repositories for genesis
Users that are interested in genesis are comparing it to the libraries listed below
Sorting:
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 5 months ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- software for UCE (and general) phylogenomics☆82Updated 4 months ago
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆120Updated 6 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Tutorial on using E-utilities☆22Updated 4 months ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 3 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆68Updated this week
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- just annotate it, dammit!☆93Updated last year
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- Visualize whole genome alignments as linear maps☆73Updated this week
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆35Updated 2 months ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 5 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆43Updated 6 months ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆46Updated 3 weeks ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆29Updated 2 weeks ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆40Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated last week
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago