A library for working with phylogenetic and population genetic data.
☆67Apr 24, 2026Updated last week
Alternatives and similar repositories for genesis
Users that are interested in genesis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for analyzing and visualizing phylogenetic placement data☆65Updated this week
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆21Jan 8, 2024Updated 2 years ago
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆13Jan 31, 2025Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆87Aug 23, 2022Updated 3 years ago
- EukRef curation pipeline☆13May 11, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆49Apr 1, 2026Updated last month
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Mar 26, 2026Updated last month
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- Dynamic CPU/GPU power scaling to maximize renewable energy usage and reduce emissions☆17Apr 11, 2025Updated last year
- Phylogenetic placement and downstream analysis☆91Jan 28, 2026Updated 3 months ago
- ☆78Jun 2, 2025Updated 11 months ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14Mar 27, 2026Updated last month
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 11 months ago
- A robust and fast clustering method for amplicon-based studies☆147Updated this week
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆39Mar 10, 2026Updated last month
- mPTP - a tool for single-locus species delimitation☆30Mar 14, 2026Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆29Jan 29, 2025Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆86Feb 26, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆16Apr 11, 2026Updated 3 weeks ago
- Best-fit model selection☆89Mar 21, 2024Updated 2 years ago
- The Biological Observation Matrix (BIOM) Format Project☆97Dec 23, 2025Updated 4 months ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 7 years ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆95Aug 11, 2025Updated 8 months ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated this week
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Nov 7, 2023Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Mar 9, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated last year
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated last month
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- distance based phylogenetic placement☆28Feb 28, 2024Updated 2 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 6 months ago