Alternatives and similar repositories for genesis

Users that are interested in genesis are comparing it to the libraries listed below

• lczech / gappa
  A toolkit for analyzing and visualizing phylogenetic placement data
  ☆62Updated 3 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated last year
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆47Updated 3 years ago
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆106Updated last month
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆84Updated 2 years ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆78Updated 5 years ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆31Updated this week
• pirovc / ganon
  ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…
  ☆95Updated last month
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆97Updated 2 years ago
• epi2me-labs / wf-16s
  ☆30Updated last month
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆85Updated last month
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆86Updated 3 months ago
• SamStudio8 / reticulatus
  A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
  ☆69Updated 3 years ago
• aleimba / bac-genomics-scripts
  Collection of scripts for bacterial genomics
  ☆45Updated 5 years ago
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆55Updated 9 months ago
• citiususc / veryfasttree
  Efficient phylogenetic tree inference for massive taxonomic datasets
  ☆119Updated 2 months ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆72Updated 8 months ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆68Updated 3 months ago
• bacpop / PopPUNK
  PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
  ☆98Updated 2 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆74Updated this week
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆136Updated last year
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆33Updated last week
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆88Updated 2 weeks ago
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆90Updated 2 weeks ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆85Updated last year
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆55Updated 4 years ago
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 6 years ago
• mikolmogorov / Ragout
  Chromosome-level scaffolding using multiple references
  ☆160Updated 8 months ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 3 years ago