interactive visualization of single-cell transcriptomes
☆11Mar 10, 2026Updated last week
Alternatives and similar repositories for RNA-Scoop
Users that are interested in RNA-Scoop are comparing it to the libraries listed below
Sorting:
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Feb 21, 2024Updated 2 years ago
- Exploring Isoform-specific interactions☆12Sep 16, 2025Updated 6 months ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- ☆18May 31, 2024Updated last year
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 3 months ago
- DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in s…☆11May 26, 2021Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 2 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- ☆14Apr 2, 2025Updated 11 months ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆20Nov 28, 2025Updated 3 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 5 months ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Mar 10, 2026Updated last week
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 2 years ago
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 8 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 2 weeks ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago
- Full-length transcriptome splicing and mutation analysis☆86Jun 24, 2024Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆22Mar 30, 2024Updated last year
- Codebase for training the SubCell models☆18Updated this week
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- A tool to check/register in UBC courses.☆26Dec 31, 2016Updated 9 years ago
- ☆23Jun 7, 2024Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Jun 17, 2024Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 10 months ago
- ☆15Aug 3, 2018Updated 7 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆34Sep 16, 2025Updated 6 months ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- ☆13May 3, 2024Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆19Dec 19, 2025Updated 3 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆12Jan 5, 2023Updated 3 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Oct 5, 2021Updated 4 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago