fpusan / moira
Accurate quality filtering of metagenomic amplicon sequences
☆12Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for moira
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆30Updated 3 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Updated 10 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆25Updated last month
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- GATB Minia assembly pipeline☆29Updated last year
- ☆16Updated last month
- Working with the outputs of sourmash in R☆25Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆19Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆47Updated 2 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 2 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆13Updated 3 weeks ago
- ☆23Updated 6 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆11Updated 6 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 3 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆17Updated last year
- Suite of tools for pangenomics built using vg☆17Updated last week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago