a toolbox for utilize organelle genomic data
☆25Aug 7, 2025Updated 7 months ago
Alternatives and similar repositories for OGU
Users that are interested in OGU are comparing it to the libraries listed below
Sorting:
- Assembly chloroplast genome and validate conformation☆15May 21, 2024Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated this week
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Mar 10, 2026Updated last week
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Deep learning embedding for nucleotide sequences☆20Mar 12, 2026Updated last week
- Preparation of species occurrences and distribution data for the use in phylogenetic analyses. SpeciesgeocodeR is built for data explorat…☆23Aug 31, 2023Updated 2 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆83Dec 3, 2025Updated 3 months ago
- Deploy Machine Learning Pipeline on AWS Fargate☆13Dec 8, 2022Updated 3 years ago
- ☆15Jan 24, 2024Updated 2 years ago
- ☆17Jan 29, 2026Updated last month
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆13Oct 27, 2019Updated 6 years ago
- Analyse RNA feature distributions.☆19Dec 16, 2024Updated last year
- Implementation of Force2Vec method for ICDM 2020 paper titled "Force2Vec: Parallel force-directed graph embedding"☆14May 30, 2022Updated 3 years ago
- ☆12Sep 14, 2025Updated 6 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Dec 12, 2025Updated 3 months ago
- ☆17Jan 14, 2026Updated 2 months ago
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 3 years ago
- ☆12Jun 23, 2025Updated 9 months ago
- R package to run BEAST2☆11Dec 8, 2025Updated 3 months ago
- blastn2dotplots: multiple dot-plot visualizer☆24Sep 15, 2025Updated 6 months ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Aug 13, 2017Updated 8 years ago
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated last year
- ☆20May 22, 2023Updated 2 years ago
- ☆17Nov 5, 2022Updated 3 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Oct 9, 2024Updated last year
- The computer language for describing species and phenotypes☆15Aug 14, 2024Updated last year
- The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R…☆17Oct 25, 2025Updated 4 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Jan 23, 2024Updated 2 years ago
- ☆18Dec 8, 2021Updated 4 years ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 4 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 3 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research☆37Mar 5, 2026Updated 2 weeks ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 4 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago