fastHaN is a fast and scalable program for constructing haplotype networks for large samples
☆20Feb 14, 2024Updated 2 years ago
Alternatives and similar repositories for fastHaN
Users that are interested in fastHaN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STR genotyping with WGS and Amplicon/Target sequencing data☆14Feb 2, 2026Updated 2 months ago
- Graph-based Sequence Assembly Toolkit☆23Feb 24, 2026Updated last month
- A haplotype analysis toolkit for natural variation study.☆31Oct 3, 2023Updated 2 years ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆82Jun 25, 2025Updated 9 months ago
- plane sweep filtering genome alignments☆23Mar 30, 2026Updated last week
- ☆19Sep 22, 2022Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Aug 15, 2024Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated last month
- MitoDNA extending assembler from NGS data☆22Mar 19, 2026Updated 3 weeks ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Mar 10, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- ☆27Sep 24, 2020Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆26Oct 16, 2025Updated 5 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- AncestralClust☆11Jul 9, 2025Updated 9 months ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Mar 26, 2026Updated 2 weeks ago
- ☆12Nov 23, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An ultrafast and memory efficient tool for phylogenomics☆26Mar 26, 2026Updated 2 weeks ago
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆54Aug 27, 2025Updated 7 months ago
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆172Feb 16, 2026Updated last month
- Pinpoints the mutation favored by selection☆34Nov 2, 2021Updated 4 years ago
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆22May 4, 2023Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆45Nov 1, 2025Updated 5 months ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15Mar 20, 2023Updated 3 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Mar 13, 2026Updated 3 weeks ago
- ☆21Feb 12, 2026Updated 2 months ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- Integrating Ribo-SEQ Upstream and Downstream Analysis☆12Oct 14, 2024Updated last year
- R package to run BEAST2☆11Dec 8, 2025Updated 4 months ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 11 months ago