ChenHuaLab / fastHaNLinks
fastHaN is a fast and scalable program for constructing haplotype networks for large samples
☆16Updated last year
Alternatives and similar repositories for fastHaN
Users that are interested in fastHaN are comparing it to the libraries listed below
Sorting:
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Updated 5 years ago
- ☆45Updated 3 years ago
- Sex assignment through coverage☆20Updated 5 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆21Updated 9 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Updated 3 years ago
- MCMCtree tutorials☆24Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Graph-based Sequence Assembly Toolkit☆22Updated 11 months ago
- Sorting and subsampling phylogenomic datasets☆26Updated 7 months ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Genome Annotation Pipeline☆39Updated last year
- a Semi-automated pipeline for assembling T2T genome☆24Updated 3 weeks ago
- paml documentation and tutorials☆62Updated 5 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 2 months ago
- ☆39Updated 3 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated last month
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 9 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Updated 10 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated 2 years ago