fastHaN is a fast and scalable program for constructing haplotype networks for large samples
☆21Feb 14, 2024Updated 2 years ago
Alternatives and similar repositories for fastHaN
Users that are interested in fastHaN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STR genotyping with WGS and Amplicon/Target sequencing data☆14Feb 2, 2026Updated 5 months ago
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated 2 months ago
- A haplotype analysis toolkit for natural variation study.☆35Oct 3, 2023Updated 2 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22May 9, 2026Updated 2 months ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆20Sep 22, 2022Updated 3 years ago
- De novo metagenome assembler☆14Mar 29, 2023Updated 3 years ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆83Jun 25, 2025Updated last year
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jul 10, 2026Updated last week
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- ☆12Dec 1, 2020Updated 5 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Updated this week
- Hackintosh EFI Folder for Dell OptiPlex 9020 SFF☆10Apr 9, 2020Updated 6 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆28Sep 24, 2020Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- MitoDNA extending assembler from NGS data☆23Mar 19, 2026Updated 4 months ago
- ☆15Feb 10, 2025Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- AncestralClust☆13Jul 9, 2025Updated last year
- ☆12Nov 23, 2020Updated 5 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code to compute the XP-CLR statistic to infer natural selection☆107Jun 13, 2022Updated 4 years ago
- An ultrafast and memory efficient tool for phylogenomics☆26Apr 17, 2026Updated 3 months ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆175May 5, 2026Updated 2 months ago
- Pinpoints the mutation favored by selection☆35Nov 2, 2021Updated 4 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.☆14May 3, 2019Updated 7 years ago
- a Semi-automated pipeline for assembling T2T genome☆28Oct 16, 2025Updated 9 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46May 23, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Parsimony on tree sequences☆13Jun 27, 2025Updated last year
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆41Apr 16, 2026Updated 3 months ago
- R package to run BEAST2☆11Dec 8, 2025Updated 7 months ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago