frederic-mahe / stampaLinks
Sequence Taxonomic Assignment by Massive Pairwise Alignments
☆14Updated 2 years ago
Alternatives and similar repositories for stampa
Users that are interested in stampa are comparing it to the libraries listed below
Sorting:
- Look Up Guild Information for Fungi in R☆22Updated 9 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Updated 5 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- Various functions for analysis of microbial community data☆47Updated 3 months ago
- Miscellaneous functions for metagenomic analysis.☆52Updated 3 weeks ago
- JAMP - Just Another Metabarcoding Pipeline☆38Updated 4 years ago
- functions for analyzing phyloseq data☆28Updated 11 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- diversity estimation under ecological networks☆83Updated 5 months ago
- A web app for environmental DNA metabarcoding analysis☆11Updated 4 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆19Updated this week
- Tools for visualising microbial community amplicon data☆70Updated 2 months ago
- Species richness with high diversity☆68Updated 5 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 5 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 8 months ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Updated 8 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Updated 2 months ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆20Updated 2 years ago
- R scripts for performing co-occurrence analyses☆36Updated 11 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last week
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- creating reference databases for amplicon sequencing☆44Updated last week
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago