frederic-mahe / stampa
Sequence Taxonomic Assignment by Massive Pairwise Alignments
☆14Updated last year
Alternatives and similar repositories for stampa
Users that are interested in stampa are comparing it to the libraries listed below
Sorting:
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆15Updated 3 months ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- functions for analyzing phyloseq data☆27Updated 3 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- Look Up Guild Information for Fungi in R☆21Updated last month
- Utilities for community ecology analysis☆18Updated 4 years ago
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆17Updated last month
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last month
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- EukRef curation pipeline☆13Updated 4 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated last year
- creating reference databases for amplicon sequencing☆36Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆15Updated last year
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- ☆55Updated this week
- JAMP - Just Another Metabarcoding Pipeline☆35Updated 3 years ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆27Updated 10 months ago
- dada2 formatted nifH database☆11Updated 11 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 11 months ago
- Informatic Sequence Classification Trees☆14Updated 3 weeks ago
- ☆20Updated 2 years ago
- ☆38Updated last year
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last week
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 2 weeks ago