Alternatives and similar repositories for fido

Users that are interested in fido are comparing it to the libraries listed below

• reptalex / phylofactor
  ☆27Updated last year
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆35Updated 2 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated 2 months ago
• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆22Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• bsmith89 / StrainFacts
  Factorize metagenotypes to infer strains and their abundances
  ☆12Updated 9 months ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated last year
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆58Updated last month
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• merlebehr / treeSeg
  Implementation of the treeSeg algorithm as an R package.
  ☆14Updated 3 years ago
• MinJinHa / COZINE
  COmpositional Zero-Inflated Network Estimation
  ☆10Updated last year
• zhouhj1994 / LinDA
  ☆37Updated last year
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆46Updated 7 years ago
• biocore / unifrac
  ☆42Updated 2 months ago
• FredHutch / nf-anvio-pangenome
  Analyze a set of genomes with the anvi'o pangenome pipeline
  ☆17Updated last year
• jsevo / taxumap
  ☆16Updated 2 years ago
• ohmeta / quantpi
  Microbiome profiling
  ☆16Updated 2 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated last week
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated 7 years ago
• xa6xa6 / metaOthello
  ☆16Updated 7 years ago
• biocore / oecophylla
  shotgun pipeline
  ☆12Updated 6 years ago
• balabanmetin / apples
  distance based phylogenetic placement
  ☆27Updated last year
• DormanLab / AmpliCI
  AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
  ☆23Updated 2 months ago
• pirovc / metameta
  ☆23Updated 5 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 4 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 6 months ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated last year