Alternatives and similar repositories for rCRUX:

Users that are interested in rCRUX are comparing it to the libraries listed below

• shaunpwilkinson / insect
  Informatic Sequence Classification Trees
  ☆14Updated 3 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆19Updated last year
• adrientaudiere / MiscMetabar
  R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
  ☆15Updated this week
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated last year
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆47Updated 6 months ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 8 months ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆13Updated 2 years ago
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆24Updated 6 years ago
• statdivlab / stamps2019
  statdivlab's teaching materials for STAMPS @ the MBL in 2019
  ☆12Updated 5 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 9 years ago
• gavinmdouglas / FuncDiv
  R package for computing alpha and beta contributional diversity metrics
  ☆10Updated last year
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆23Updated 3 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last week
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆22Updated 2 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• Maine-eDNA / medna-metadata
  An open-source data management system for tracking environmental DNA samples and metadata
  ☆13Updated 5 months ago
• gmteunisse / ggnested
  ggplots for nested data
  ☆10Updated 6 months ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated last week
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• lch14forever / beem-static
  📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
  ☆9Updated 3 years ago
• gjeunen / reference_database_creator
  creating reference databases for amplicon sequencing
  ☆30Updated last month
• barakbri / dacomp
  Non parametric differential abundance tests for microbiome data
  ☆9Updated 3 years ago
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 3 years ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago