CalCOFI / rCRUXLinks
A repository for my work on rCRUX
☆11Updated last year
Alternatives and similar repositories for rCRUX
Users that are interested in rCRUX are comparing it to the libraries listed below
Sorting:
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆17Updated 2 weeks ago
- Informatic Sequence Classification Trees☆14Updated last month
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆15Updated 4 months ago
- Look Up Guild Information for Fungi in R☆21Updated 3 months ago
- Speedy versions of phyloseq functions☆47Updated last year
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- Species richness with high diversity☆68Updated 2 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- creating reference databases for amplicon sequencing☆39Updated last week
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 5 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- functions for analyzing phyloseq data☆28Updated 4 months ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆71Updated last week
- R Interfaces to Phylogenetic Software☆12Updated 4 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Miscellaneous functions for metagenomic analysis.☆50Updated 3 weeks ago
- ggplots for nested data☆10Updated 11 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated 11 months ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- JAMP - Just Another Metabarcoding Pipeline☆36Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- Linear Decomposition Model☆24Updated 2 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated 3 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆37Updated 9 years ago