yechengxi / DBG2OLCLinks
A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
β66Updated 5 years ago
Alternatives and similar repositories for DBG2OLC
Users that are interested in DBG2OLC are comparing it to the libraries listed below
Sorting:
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignmentβ87Updated 4 years ago
- πScaffold genome sequence assemblies using linked or long read sequencing dataβ95Updated last year
- πGenome assembly scaffolder using minimizer graphsβ85Updated last year
- β Long Interval Nucleotide K-mer Scaffolderβ73Updated 9 months ago
- Tools for the analysis of structural variation in genomesβ81Updated last year
- An accurate and ultra-fast hybrid genome assemblerβ87Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphsβ107Updated last week
- PacBio hybrid error correction through iterative short read consensusβ60Updated 6 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffoldsβ74Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transformβ45Updated 5 years ago
- Evaluate variant calls and its combination with k-mer multiplicityβ67Updated 3 years ago
- βοΈ Genome assembly polishing & SNV detectionβ71Updated 3 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/nβ¦β70Updated 3 years ago
- Long read alignerβ115Updated 2 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)β73Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mersβ87Updated 6 years ago
- Mapping pipeline for data generated using Arima-HiCβ81Updated last year
- A fast tool for hybrid genome assembly of long and short readsβ78Updated 5 years ago
- Interactive visualization of assembly graphsβ83Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Indexβ102Updated 3 years ago
- Error correction for Illumina RNA-seq readsβ67Updated 3 weeks ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore readsβ67Updated 4 years ago
- De novo genome assembly and multisample variant callingβ112Updated 6 years ago
- β119Updated 3 months ago
- β45Updated 9 years ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extensionβ47Updated 5 years ago
- Chromosome-level scaffolding using multiple referencesβ164Updated last year
- A tool for Racon polishing of miniasm assembliesβ78Updated 4 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Pythonβ71Updated 2 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomesβ60Updated last year