A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
β67Jul 23, 2020Updated 5 years ago
Alternatives and similar repositories for DBG2OLC
Users that are interested in DBG2OLC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo genome assembler.β12Jul 30, 2018Updated 7 years ago
- πRAILS and ππ¨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-fillingβ27Apr 1, 2026Updated last month
- Scaffolding with RNA-seq read alignmentβ21Jul 10, 2018Updated 7 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/grβ¦β297May 9, 2024Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C dataβ20Aug 18, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TSEBRA: Transcript Selector for BRAKERβ49Apr 7, 2026Updated last month
- Detect and phase minor SNVs from long-read sequencing dataβ14Dec 28, 2021Updated 4 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.β210Nov 18, 2022Updated 3 years ago
- β Long Interval Nucleotide K-mer Scaffolderβ73Mar 27, 2026Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignmentβ87Apr 8, 2021Updated 5 years ago
- BESST - scaffolder for genomic assembliesβ58Jul 6, 2023Updated 2 years ago
- A fuzzy Bruijn graph approach to long noisy reads assemblyβ39Mar 15, 2017Updated 9 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transformβ45Jul 7, 2020Updated 5 years ago
- Read error correction tool for PacBio dataβ12Dec 11, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The final version 2 release of our software to detect core genes in eukaryotic genomesβ30Mar 31, 2015Updated 11 years ago
- Long read to reference genome mapping toolβ13Mar 14, 2024Updated 2 years ago
- Scaffolding of genomic assemblies with RNA seq dataβ15Oct 8, 2015Updated 10 years ago
- Pilon is an automated genome assembly improvement and variant detection toolβ380Apr 10, 2022Updated 4 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomesβ10Oct 16, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on rβ¦β309Mar 18, 2024Updated 2 years ago
- A fast tool for hybrid genome assembly of long and short readsβ78Apr 22, 2020Updated 6 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assemblyβ530Sep 27, 2023Updated 2 years ago
- An accurate and ultra-fast hybrid genome assemblerβ88Apr 10, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GAPPadder is tool for closing gaps on draft genomes with short sequencing dataβ28Jun 1, 2017Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.β35Dec 11, 2019Updated 6 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Indexβ102Feb 6, 2022Updated 4 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)β18Jan 18, 2016Updated 10 years ago
- Long-read splice alignment with high accuracyβ64Sep 26, 2024Updated last year
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore readsβ273Oct 13, 2022Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C dataβ189May 17, 2024Updated 2 years ago
- tools for error correction and working with long read dataβ44Dec 1, 2014Updated 11 years ago
- βοΈ Genome assembly polishing & SNV detectionβ73May 7, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- β15Jul 3, 2018Updated 7 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTagβ174May 30, 2021Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphsβ108Jan 17, 2026Updated 4 months ago
- An accurate GFF3/GTF lift over pipelineβ537Aug 1, 2023Updated 2 years ago
- TULIP - The Uncorrected Long read Itegration Pipelineβ27Jan 15, 2018Updated 8 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCONβ¦β205Mar 4, 2022Updated 4 years ago
- Scaffolding genomes using synthetic long read cloudsβ20Oct 11, 2016Updated 9 years ago