38 / pyd4
The python binding for D4 format
☆16Updated 3 years ago
Alternatives and similar repositories for pyd4:
Users that are interested in pyd4 are comparing it to the libraries listed below
- ☆22Updated 5 months ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 7 months ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆9Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Benchmark structural variant calls against a reference set☆17Updated 6 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Variant call adjudication☆16Updated 10 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 3 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- ☆12Updated 2 weeks ago
- horizontal pileup☆16Updated 2 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- convert CHAIN format to PAF format☆14Updated 4 months ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆19Updated this week
- Indel-aware consensus for aligned BAM☆21Updated last month
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- Unfazed by genomic variant phasing☆26Updated 11 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- drunk on perbase pileups and lua expressions☆18Updated this week
- A minimap2 implementation with binseq inputs☆14Updated this week
- ☆12Updated 3 years ago