38 / pyd4Links
The python binding for D4 format
☆16Updated 3 years ago
Alternatives and similar repositories for pyd4
Users that are interested in pyd4 are comparing it to the libraries listed below
Sorting:
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 10 months ago
- ☆22Updated 8 months ago
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Variant call adjudication☆16Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 3 weeks ago
- Unfazed by genomic variant phasing☆27Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last week
- ☆14Updated last year
- ☆9Updated 3 years ago
- Benchmark structural variant calls against a reference set☆17Updated 9 months ago
- Location of public benchmarking; primarily final results☆18Updated 5 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 6 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- ☆16Updated 6 months ago
- Python bindings to minimap2☆16Updated 7 years ago
- gia: Genomic Interval Arithmetic☆65Updated 11 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week