38 / pyd4
The python binding for D4 format
☆16Updated 3 years ago
Alternatives and similar repositories for pyd4:
Users that are interested in pyd4 are comparing it to the libraries listed below
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- ☆22Updated 3 months ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 6 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Variant call adjudication☆16Updated 9 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- ☆9Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Benchmark structural variant calls against a reference set☆17Updated 5 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated this week
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 9 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆19Updated this week
- horizontal pileup☆16Updated 2 years ago
- Rust wrapper for the next generation (still currently in C++)☆23Updated last month
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Singular Genomics Demultiplexing Tool☆16Updated last year
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago