38 / pyd4

Related projects ⓘ

Alternatives and complementary repositories for pyd4

• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last month
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last month
• nh13 / fqme
  ☆22Updated 2 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆13Updated 6 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated last year
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 7 years ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated last month
• usnistgov / SVClassify
  Hemang Parikh
  ☆11Updated 8 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 5 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 2 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 3 weeks ago
• collaborativebioinformatics / nibSV
  ☆9Updated 2 years ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆16Updated this week
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• mchaisso / mcutils
  ☆12Updated 3 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆26Updated 6 months ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆26Updated 5 months ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆18Updated 4 years ago
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆13Updated 2 years ago
• mcfrith / dnarrange
  ☆15Updated 7 months ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago