38 / pyd4
The python binding for D4 format
☆16Updated 3 years ago
Alternatives and similar repositories for pyd4:
Users that are interested in pyd4 are comparing it to the libraries listed below
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 4 months ago
- ☆22Updated 2 months ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Variant call adjudication☆16Updated 8 months ago
- Benchmark structural variant calls against a reference set☆17Updated 3 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 9 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- ☆9Updated 2 years ago
- ☆12Updated 3 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆10Updated 2 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆17Updated this week
- Unfazed by genomic variant phasing☆26Updated 8 months ago
- v2.x of the microassembly based somatic variant caller☆14Updated last week
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated last month
- Hemang Parikh☆11Updated 9 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆31Updated last week
- maze: match visualizer☆9Updated 3 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 8 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago