Alternatives and similar repositories for poranges:

Users that are interested in poranges are comparing it to the libraries listed below

• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated this week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆50Updated 3 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆78Updated 2 weeks ago
• abdenlab / oxbow
  Read specialized NGS formats as data frames in R, Python, and more.
  ☆69Updated this week
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆18Updated this week
• gerlichlab / hicognition
  A visual exploration and hypothesis testing tool for 3D genomics
  ☆13Updated 11 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 7 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆58Updated last year
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆32Updated last month
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆20Updated 3 weeks ago
• agalitsyna / RedClib
  Red-C data processing
  ☆14Updated last year
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆31Updated this week
• COMBINE-lab / pyroe
  ☆16Updated 2 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆102Updated 9 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆55Updated last week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆35Updated 3 weeks ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 8 years ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 8 months ago
• pyranges / pyranges_1.x
  PyRanges as a DataFrame subclass.
  ☆15Updated this week
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆25Updated this week
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆28Updated this week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆61Updated this week
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆17Updated 2 years ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 7 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated last year
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆53Updated last month
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆27Updated last month
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆44Updated last year
• pkerpedjiev / negspy
  Python NGS Repository
  ☆9Updated 7 months ago