Alternatives and similar repositories for poranges:

Users that are interested in poranges are comparing it to the libraries listed below

• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 4 months ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated last month
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆21Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆84Updated last month
• abdenlab / oxbow
  Read specialized NGS formats as data frames in R, Python, and more.
  ☆70Updated this week
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆33Updated 3 weeks ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 8 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆102Updated 11 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• pyranges / pyranges_1.x
  PyRanges as a DataFrame subclass.
  ☆16Updated last week
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆20Updated last week
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 10 months ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆28Updated 3 weeks ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆29Updated last week
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆33Updated this week
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆56Updated last month
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆17Updated 2 years ago
• gerlichlab / hicognition
  A visual exploration and hypothesis testing tool for 3D genomics
  ☆13Updated last year
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 9 months ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 8 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated 3 weeks ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated last week
• pepkit / pepspec
  Documentation for PEP specification and all PEPkit software
  ☆9Updated 3 weeks ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month
• kaizhang / anndata-rs
  ☆31Updated this week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 3 weeks ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• agalitsyna / RedClib
  Red-C data processing
  ☆15Updated 2 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year