Alternatives and similar repositories for poranges

Users that are interested in poranges are comparing it to the libraries listed below

• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 6 months ago
• pyranges / ruranges
  Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
  ☆18Updated last month
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆25Updated last week
• pyranges / pyranges_1.x
  PyRanges as a DataFrame subclass.
  ☆24Updated 3 weeks ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆52Updated 11 months ago
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆101Updated 3 weeks ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆54Updated 3 months ago
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆35Updated 3 weeks ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• kaizhang / anndata-rs
  ☆37Updated last week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆107Updated last month
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆39Updated 5 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆42Updated this week
• gerlichlab / hicognition
  A visual exploration and hypothesis testing tool for 3D genomics
  ☆13Updated last year
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 6 months ago
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated 3 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated 3 weeks ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆60Updated 3 weeks ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 10 months ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆32Updated 5 months ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆62Updated last month
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆41Updated this week
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 6 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated 9 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆66Updated last month