ruhulsbu / NanoBLASTerLinks
Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences
☆10Updated 9 years ago
Alternatives and similar repositories for NanoBLASTer
Users that are interested in NanoBLASTer are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 9 months ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ☆28Updated 6 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- GBWT-based handle graph☆31Updated last week
- ☆24Updated 2 months ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Long read to reference genome mapping tool☆13Updated last year
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- ☆13Updated 9 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 7 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week