HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.
☆12Sep 18, 2024Updated 2 years ago
Alternatives and similar repositories for HyLight
Users that are interested in HyLight are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last month
- Metagenome Clustering and Association Tool.☆30Sep 22, 2026Updated last month
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Just another minhash implementation.☆13Updated this week
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 7 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- ☆21Feb 15, 2025Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- Panaln: Indexing pangenome for read alignment☆10Apr 16, 2025Updated last year
- In-browser tools for bacterial genome analysis 🦅☆12Oct 21, 2026Updated 2 weeks ago
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metax: Accurate Cross-Domain Taxon Profiling via a Probabilistic Model of Genome Coverage☆39Oct 12, 2026Updated 3 weeks ago
- De novo metagenome assembler☆15Mar 29, 2023Updated 3 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆35Jun 17, 2024Updated 2 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 4 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆22Nov 6, 2023Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Aug 10, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆19May 10, 2023Updated 3 years ago
- A machine learning approach to alignment filtering☆18Jun 18, 2026Updated 4 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆42Apr 17, 2024Updated 2 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 8 months ago
- ☆18Oct 7, 2024Updated 2 years ago
- Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.☆11Mar 25, 2026Updated 7 months ago
- Strain-level abundance analysis tool for short-read metagenomics☆12Jul 12, 2026Updated 3 months ago
- PlasRAG is a deep learning-based tool specifically designed for analyzing plasmids, which serves two purposes: (1) plasmid property chara…☆10Dec 24, 2025Updated 10 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆45Apr 8, 2024Updated 2 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆129Oct 28, 2026Updated last week
- Unleash the full power of your k-mers!☆25Sep 18, 2026Updated last month
- Strain-level metagenomic classification with Metagenome Assembly driven Database Reduction approach☆12Oct 27, 2026Updated last week
- AlfaPang builds pangenome graphs without alignments or references.☆18Oct 16, 2026Updated 2 weeks ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year