HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.
☆12Sep 18, 2024Updated 2 years ago
Alternatives and similar repositories for HyLight
Users that are interested in HyLight are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19May 10, 2023Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A machine learning approach to alignment filtering☆17Jun 18, 2026Updated 3 months ago
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆22Nov 6, 2023Updated 2 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- De novo metagenome assembler☆15Mar 29, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 9, 2026Updated 2 weeks ago
- ☆21Feb 15, 2025Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 10 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- Just another minhash implementation.☆13Sep 14, 2026Updated last week
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆130Aug 19, 2026Updated last month
- Pathogenfinder2☆19Apr 20, 2026Updated 5 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Aug 10, 2026Updated last month
- Alignment-Free Taxonomic Classification Deep Learning Model☆17Apr 8, 2026Updated 5 months ago
- Calculate assocations between genes and traits☆32Mar 10, 2025Updated last year
- Bifrost graph gene caller.☆101Aug 31, 2026Updated 3 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 8 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 3 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 6 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago