KmerCamelπ« provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
β20Sep 9, 2026Updated 2 weeks ago
Alternatives and similar repositories for kmercamel
Users that are interested in kmercamel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transformβ25Nov 20, 2025Updated 10 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.β29Jul 12, 2026Updated 2 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.β21Aug 26, 2026Updated last month
- Singular Genomics Demultiplexing Toolβ16Mar 5, 2024Updated 2 years ago
- A Rust implementation of SSHashβ20Aug 30, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MONI: A Pangenomic Index for Finding MEMsβ38Mar 25, 2025Updated last year
- Optimal distance lower bound k-mer sampling.β12Jun 19, 2024Updated 2 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomesβ46Mar 9, 2026Updated 6 months ago
- Next Index to Query Kmer Intersectionβ17Feb 1, 2023Updated 3 years ago
- Iterate over minimizers of a DNA sequenceβ33Jul 12, 2024Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequencesβ18Mar 3, 2026Updated 6 months ago
- π 𧬠SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.β109Sep 3, 2026Updated 3 weeks ago
- Space-efficient pseudoalignment with a colored de Bruijn graphβ58Mar 13, 2025Updated last year
- A Rust library providing fully dynamic sets of k-mers with high localityβ47May 13, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A C++ library to benchmark inverted indexes.β24Aug 4, 2020Updated 6 years ago
- β‘οΈ π§¬ Fulgor is a fast and space-efficient colored de Bruijn graph index.β60Sep 18, 2026Updated last week
- Minimum plain text representation of kmer setsβ19Jan 30, 2025Updated last year
- R-Index-F Library for Pattern Matchingβ12Aug 8, 2024Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment libraryβ10Jun 11, 2025Updated last year
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGβ¦β12Sep 18, 2024Updated 2 years ago
- Genomic sequence preprocessing toolkitβ14Jul 27, 2026Updated 2 months ago
- A SIMD-accelerated library to compute random minimizersβ48Aug 26, 2026Updated last month
- ProphAsm β a rapid computation of simplitigs directly from k-mer setsβ25Feb 17, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pairwise nucleotide alignment benchmark of Rust bindingsβ32Jul 27, 2023Updated 3 years ago
- Efficient, parallel compression for terabyte-scale dataβ64Feb 25, 2026Updated 7 months ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arraysβ20Jun 23, 2025Updated last year
- String algorithm visualizationsβ14Feb 7, 2023Updated 3 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rβ¦β18May 21, 2017Updated 9 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)β22Nov 24, 2024Updated last year
- β17Aug 8, 2025Updated last year
- β14Dec 26, 2025Updated 9 months ago
- Index kmtricks bf matricesβ49Sep 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Transfer HiFi read mappings from their own assembly contigs to a standard referenceβ40Dec 30, 2025Updated 8 months ago
- Iterate k-min-mers from a DNA sequence in Rustβ13Apr 8, 2024Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessionsβ46May 13, 2026Updated 4 months ago
- BWT construction and search