KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
☆20Mar 20, 2026Updated last week
Alternatives and similar repositories for kmercamel
Users that are interested in kmercamel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆38Mar 9, 2026Updated 3 weeks ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 3 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- A SIMD-accelerated library to compute random minimizers☆39Mar 1, 2026Updated 3 weeks ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆96Mar 23, 2026Updated last week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Efficient, parallel compression for terabyte-scale data☆61Feb 25, 2026Updated last month
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated last month
- A C++ library to benchmark inverted indexes.☆21Aug 4, 2020Updated 5 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Jun 23, 2025Updated 9 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 9 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 2 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated last week
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆129Updated this week
- ☆19Feb 15, 2025Updated last year
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆124Mar 20, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 8 years ago
- ☆13Dec 26, 2025Updated 3 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- Index kmtricks bf matrices☆47Feb 13, 2026Updated last month
- Fast sequence distance estimates☆27Mar 10, 2026Updated 2 weeks ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Feb 26, 2026Updated last month
- BWT construction and search☆126Jan 14, 2026Updated 2 months ago