KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
☆20Apr 14, 2026Updated 3 weeks ago
Alternatives and similar repositories for kmercamel
Users that are interested in kmercamel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated 2 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 5 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 5 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆98Updated this week
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Mar 13, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 2 months ago
- Efficient, parallel compression for terabyte-scale data☆63Feb 25, 2026Updated 2 months ago
- A C++ library to benchmark inverted indexes.☆21Aug 4, 2020Updated 5 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆18Jun 23, 2025Updated 10 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated last year
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated 2 weeks ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆23Dec 11, 2024Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆131Apr 17, 2026Updated 3 weeks ago
- ☆21Feb 15, 2025Updated last year
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A new high-resolution long-read metagenome assembler for even noisy reads☆146Apr 5, 2026Updated last month
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 8 years ago
- ☆13Dec 26, 2025Updated 4 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Index kmtricks bf matrices☆48Apr 29, 2026Updated last week
- Fast sequence distance estimates☆28Apr 27, 2026Updated last week
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Feb 26, 2026Updated 2 months ago