alevar / tiebrush
Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
☆17Updated this week
Alternatives and similar repositories for tiebrush:
Users that are interested in tiebrush are comparing it to the libraries listed below
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- Reducing reference bias using multiple population reference genomes☆32Updated 10 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 7 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Automated Detection and Qualification of Differential Methylation☆12Updated last year
- Flexible linear mixed model framework for Genome Wide Association Studies☆19Updated last month
- a lexicographically-based GTF/GFF sorter☆32Updated 7 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- ☆14Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆16Updated last month
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 3 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Unfazed by genomic variant phasing☆26Updated 10 months ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated 11 months ago