alevar / tiebrush
Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
☆17Updated 3 months ago
Alternatives and similar repositories for tiebrush:
Users that are interested in tiebrush are comparing it to the libraries listed below
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 7 months ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- ☆24Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆28Updated 9 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 3 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.☆14Updated this week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆41Updated 2 months ago
- Unfazed by genomic variant phasing☆26Updated 8 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- toolkit to process gtf files☆16Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 8 months ago
- ☆13Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 3 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- Identifying repeats in high-throughput sequencing data☆15Updated 9 months ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last week
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last month
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 8 years ago