Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
☆18Oct 12, 2025Updated 9 months ago
Alternatives and similar repositories for tiebrush
Users that are interested in tiebrush are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Emending Alignment of Spliced Transcript Reads☆12Jan 19, 2026Updated 6 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆41Jun 8, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆15May 22, 2026Updated 2 months ago
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- DTU analysis tool inspired by llamas☆12May 22, 2026Updated 2 months ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 9 months ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Pan-transcriptomic phenotyping☆19May 12, 2026Updated 2 months ago
- A tool to facilitate comparative visualisation of CLIP data☆18Nov 29, 2023Updated 2 years ago
- ☆19May 10, 2023Updated 3 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆39Apr 10, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated 4 months ago
- A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)☆24Nov 3, 2021Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 weeks ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Jul 29, 2026Updated 2 weeks ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 6 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 8 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 4 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37May 28, 2024Updated 2 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆12Oct 14, 2025Updated 9 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆44Dec 18, 2025Updated 7 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 6 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated last year
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 5 months ago