alevar / tiebrushLinks
Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
☆17Updated 2 weeks ago
Alternatives and similar repositories for tiebrush
Users that are interested in tiebrush are comparing it to the libraries listed below
Sorting:
- Functions to compare a SV call sets against a truth set.☆30Updated last week
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- Unfazed by genomic variant phasing☆26Updated last year
- Population-wide Deletion Calling☆35Updated 2 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆21Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ☆14Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- transposable element typing pipeline☆18Updated last year
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated last month
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated this week
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 6 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- ☆11Updated this week
- Find Unique genomic Regions☆30Updated 2 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 2 weeks ago
- Split a BAM file by haplotype support☆16Updated 7 years ago