alevar / tiebrushLinks
Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
☆17Updated last month
Alternatives and similar repositories for tiebrush
Users that are interested in tiebrush are comparing it to the libraries listed below
Sorting:
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- ☆14Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 7 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ☆23Updated 5 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- ☆45Updated last week
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago