angelovangel / fasterLinks
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
☆31Updated 8 months ago
Alternatives and similar repositories for faster
Users that are interested in faster are comparing it to the libraries listed below
Sorting:
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- ☆21Updated 10 months ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Unfazed by genomic variant phasing☆27Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated last month
- ☆14Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Variant call adjudication☆16Updated last year
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆25Updated last month
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 4 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 6 months ago
- Genome browser hub for the T2T genomes and resources☆23Updated 2 weeks ago
- Two pass alignment for long reads☆22Updated 4 years ago