A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
☆32Mar 20, 2026Updated 2 months ago
Alternatives and similar repositories for faster
Users that are interested in faster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆23Aug 22, 2025Updated 9 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆23Sep 9, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool for demultiplexing Nanopore barcode sequence data☆25Mar 9, 2026Updated 2 months ago
- FASTA and FASTQ parsing in Rust☆85Mar 14, 2025Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 6 months ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 6 months ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆28Apr 24, 2026Updated last month
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- seqfu - Sequece Fastx Utilities☆127Updated this week
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- Grep for FASTQ files☆104Apr 30, 2026Updated 3 weeks ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 3 months ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Jan 4, 2024Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A quality control tool for FASTQ files written in rust☆55Jun 14, 2025Updated 11 months ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 8 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆78Dec 5, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Fast FASTX parsing and k-mer methods in Rust☆211Apr 20, 2026Updated last month
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- ☆21Dec 26, 2025Updated 5 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Updated this week
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 4 months ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 2 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆16Nov 7, 2025Updated 6 months ago
- diploid SNV caller for error-prone reads☆210Apr 26, 2024Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Randomly subsample sequencing reads or alignments☆266May 11, 2026Updated 2 weeks ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 7 months ago