angelovangel / fasterView external linksLinks
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
☆32Nov 14, 2025Updated 3 months ago
Alternatives and similar repositories for faster
Users that are interested in faster are comparing it to the libraries listed below
Sorting:
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- ☆23Sep 9, 2025Updated 5 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated last year
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Aug 22, 2025Updated 5 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆25May 10, 2025Updated 9 months ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 5 months ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Jan 4, 2024Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 5 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Dec 11, 2025Updated 2 months ago
- seqfu - Sequece Fastx Utilities☆126Jan 31, 2026Updated 2 weeks ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Dec 5, 2023Updated 2 years ago
- ☆21Dec 26, 2025Updated last month
- Linter rules for Nextflow DSL scripts☆34Feb 2, 2026Updated last week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Jan 9, 2026Updated last month
- BigWig and BAM utilities☆102Mar 26, 2024Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 3 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- FASTA and FASTQ parsing in Rust☆82Mar 14, 2025Updated 11 months ago
- Grep for FASTQ files☆103Dec 17, 2025Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 6 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 3 weeks ago
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- Fast FASTX parsing and k-mer methods in Rust☆209Jan 27, 2026Updated 2 weeks ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Dec 14, 2024Updated last year
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- ☆18Feb 5, 2026Updated last week
- Graph-based assembly phasing☆91Nov 25, 2025Updated 2 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆140Feb 14, 2025Updated last year
- A quality control tool for FASTQ files written in rust☆52Jun 14, 2025Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆26Dec 3, 2025Updated 2 months ago