angelovangel / fasterLinks
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
☆31Updated this week
Alternatives and similar repositories for faster
Users that are interested in faster are comparing it to the libraries listed below
Sorting:
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated last week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- ☆21Updated 11 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 weeks ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆26Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 5 months ago
- Variant call adjudication☆16Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 2 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 5 months ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 3 weeks ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 7 months ago
- drunk on perbase pileups and lua expressions☆19Updated this week
- A FASTA/FASTQ format parser library☆20Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago