BUStools / BUS-format
BUS format specification
☆13Updated 4 years ago
Related projects: ⓘ
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- ☆22Updated 2 years ago
- maze: match visualizer☆9Updated 2 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 2 years ago
- Rapid and accurate ancestry inference using SNVs.☆12Updated 5 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 5 years ago
- ☆12Updated last month
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆17Updated last month
- ☆9Updated 2 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆12Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆16Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- ☆12Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆11Updated last week
- Simplifies parallel processing of DNA sequencing reads☆9Updated last year
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated 8 months ago
- Bedfile perturbation tool☆16Updated 9 months ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- ☆20Updated 9 months ago
- Teaching modules for Human Genome Variation Lab.☆18Updated last month
- Two pass alignment for long reads☆20Updated 3 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 2 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated 9 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 4 years ago
- Pan gGnome Viewer☆10Updated 7 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆12Updated 5 years ago