BUS format specification
☆13Nov 18, 2019Updated 6 years ago
Alternatives and similar repositories for BUS-format
Users that are interested in BUS-format are comparing it to the libraries listed below
Sorting:
- ☆21Dec 26, 2025Updated 2 months ago
- Tools for working with BUS files☆102May 27, 2025Updated 9 months ago
- ☆23Jul 18, 2019Updated 6 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- ☆12Aug 30, 2024Updated last year
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- ☆13Jun 15, 2024Updated last year
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆18Feb 4, 2026Updated last month
- A place to put docker build files☆13Oct 3, 2023Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 4 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Embed excel file as an excel-alike table into sphinx documentation☆13Aug 20, 2017Updated 8 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- Website for the 2021-2022 Caltech class Bi/BE/CS 183: Introduction to Computational Biology and Bioinformatics☆10Mar 11, 2022Updated 4 years ago
- bgzip support for Rust☆18Nov 16, 2023Updated 2 years ago
- Rust bindings to minimap2 library☆109Mar 2, 2026Updated 2 weeks ago
- Generic k-means implementation written in Rust☆16Feb 5, 2020Updated 6 years ago
- ☆35Mar 2, 2021Updated 5 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Workshop for using BigBrain atlas of cortical layers☆13Feb 3, 2021Updated 5 years ago
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated last year
- Examples of kallisto + sleuth☆11May 18, 2017Updated 8 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Sep 28, 2018Updated 7 years ago
- ☆13Apr 20, 2023Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated last month