Alternatives and similar repositories for bgzip-rs

Users that are interested in bgzip-rs are comparing it to the libraries listed below

• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated 10 months ago
• nh13 / fqme
  ☆21Updated 10 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 3 months ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated last year
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆10Updated 2 years ago
• ostnam / rust-wfa
  ☆11Updated 3 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated 2 years ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated this week
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 11 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 2 weeks ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last year
• kcleal / superintervals
  Fast interval intersection library
  ☆43Updated last month
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆16Updated 2 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated 2 years ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆53Updated 2 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆21Updated last week
• Ebedthan / sabreur
  fast, reliable and handy demultiplexing tool for fastx files
  ☆13Updated 2 months ago
• BUStools / BUS-format
  BUS format specification
  ☆14Updated 5 years ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 8 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆28Updated 2 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 8 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year