Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"
☆11Jun 8, 2018Updated 7 years ago
Alternatives and similar repositories for bowtie-scaling
Users that are interested in bowtie-scaling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 7 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- MUMmer for HPC☆17Jan 7, 2013Updated 13 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- Generate command line parser using getopt_long☆16Dec 11, 2024Updated last year
- AUGUSTUS v3.2.1 for installation on Mac OS X☆12May 21, 2018Updated 7 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- ☆57Aug 11, 2022Updated 3 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated 2 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- ☆52Sep 20, 2022Updated 3 years ago
- Bax File Decoder and Data Compressor☆34Jan 3, 2024Updated 2 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 6 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- Generic k-means implementation written in Rust☆16Feb 5, 2020Updated 6 years ago
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- ☆21Dec 26, 2025Updated 3 months ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Graph-vector database that queried 1 billion edges for $2.50. Rust, OpenCypher, vector search, 14 graph algorithms. 74M nodes / 1B edges …☆55Apr 12, 2026Updated last week
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 3 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆70Updated this week
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago