Alternatives and similar repositories for seqtool

Users that are interested in seqtool are comparing it to the libraries listed below

• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 5 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 11 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 4 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆26Updated 2 weeks ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆37Updated last week
• nh13 / fqme
  ☆22Updated 6 months ago
• chfi / waragraph
  ☆27Updated last year
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated last month
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆25Updated last year
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆18Updated 2 weeks ago
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 2 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆20Updated this week
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• Ebedthan / sabreur
  fast, reliable and handy demultiplexing tool for fastx files
  ☆14Updated last month
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated 2 years ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 6 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• chfi / rs-gfa
  GFA parser in Rust
  ☆31Updated 2 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 9 months ago