Alternatives and similar repositories for seqtool

Users that are interested in seqtool are comparing it to the libraries listed below

• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 6 years ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆38Updated 4 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 2 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 5 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 8 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆66Updated last year
• nh13 / fqme
  ☆21Updated last month
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆29Updated 6 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 2 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆24Updated last week
• BUStools / BUS-format
  BUS format specification
  ☆13Updated 6 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 4 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆10Updated last month
• brentp / seqcover
  seqcover allows users to view coverage for hundreds of genes and dozens of samples
  ☆52Updated 4 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last month
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆27Updated last month
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆36Updated last year
• wdecoster / kyber
  ☆21Updated last year
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last year
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆21Updated 5 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆37Updated 9 months ago
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆17Updated 3 months ago
• genomics-dev / variantkey
  Numerical Encoding for Human Genetic Variants
  ☆42Updated 2 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Updated 7 months ago