markschl / seqtoolLinks
Fast and flexible tool for reading, modifying and writing biological sequences
☆17Updated 3 weeks ago
Alternatives and similar repositories for seqtool
Users that are interested in seqtool are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- sfasta☆35Updated 6 months ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 3 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 9 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week
- ☆21Updated 10 months ago
- bedtools-like functionality for interval sets in rust☆54Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- BUS format specification☆13Updated 5 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 2 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated 10 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 4 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 2 weeks ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Fast sequencing data quality metrics☆28Updated last month
- A graph aligner☆29Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Python language bindings for bwa☆11Updated last month
- Fast interval intersection library☆43Updated 2 months ago
- Toolkit for manipulating FASTA and SAM files☆20Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ☆21Updated 9 months ago