Fast and flexible tool for reading, modifying and writing biological sequences
☆18Feb 4, 2026Updated 8 months ago
Alternatives and similar repositories for seqtool
Users that are interested in seqtool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 10 months ago
- FASTA and FASTQ parsing in Rust☆84Mar 14, 2025Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast FASTX parsing and k-mer methods in Rust☆214Updated this week
- Alignment-based gene expression quantification☆40Oct 1, 2026Updated last week
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 3 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- ☆53Sep 20, 2022Updated 4 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Grep for FASTQ files☆102Sep 26, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 3 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Jul 19, 2023Updated 3 years ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 6 months ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆57Mar 31, 2023Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 7 months ago
- A high-performance BigWig and BigBed library in Rust☆127Aug 14, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 6 years ago
- ☆20Aug 18, 2020Updated 6 years ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 10 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- De Bruijn graphs in Rust☆72Jul 22, 2024Updated 2 years ago
- Single-Cell RNA-seq pseudo-aligner☆53May 6, 2024Updated 2 years ago
- Unbiased single-cell transcriptomic data cell type identification☆15Updated this week
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆14Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Container action for building webr binaries on r-universes☆21Aug 21, 2026Updated last month
- bisulfite sequencing pipeline from fastq to methylation reports☆13Aug 25, 2026Updated last month
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Nunux Keeper CLI☆11Oct 3, 2017Updated 9 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated last year
- An R package for easy pie charts☆18Aug 25, 2025Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago