markschl / seqtool
Fast and flexible tool for reading, modifying and writing biological sequences
☆17Updated this week
Alternatives and similar repositories for seqtool:
Users that are interested in seqtool are comparing it to the libraries listed below
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 10 months ago
- Alignment-based gene expression quantification☆27Updated last month
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 5 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 3 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated last year
- bgzip support for Rust☆16Updated last year
- Efficient querying of biological databases☆36Updated last week
- Rust utility code☆33Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- ☆58Updated 2 years ago
- Command line tools for IntSpan related bioinformatics operations☆13Updated last month
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Updated 5 years ago
- ☆21Updated 2 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Rust implmentation of VCF parser☆23Updated 2 years ago
- An ultrafast and memory efficient tool for phylogenomics☆25Updated last month
- fast, reliable and handy demultiplexing tool for fastx files☆14Updated 2 weeks ago
- Rust package for constructing and analyzing phylogenies.☆15Updated last week
- ☆22Updated 5 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Rust bindings to minimap2 library☆95Updated last week
- ☆27Updated last year
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- GBWT-based handle graph☆31Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- drunk on perbase pileups and lua expressions☆18Updated this week
- ntHash implementation in Rust☆36Updated 9 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago