☆12Aug 30, 2024Updated last year
Alternatives and similar repositories for bioRxiv-diff
Users that are interested in bioRxiv-diff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 5 months ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 10 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 3 months ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 2 years ago
- ☆27Feb 10, 2025Updated last year
- The Monod package fits CME models to sequencing data.☆33Mar 18, 2026Updated last week
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 4 months ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆39Feb 20, 2026Updated last month
- ☆14Feb 9, 2026Updated last month
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆27Feb 8, 2026Updated last month
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Website for the 2021-2022 Caltech class Bi/BE/CS 183: Introduction to Computational Biology and Bioinformatics☆10Mar 11, 2022Updated 4 years ago
- edgePython is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data. It also include…☆49Mar 2, 2026Updated 3 weeks ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- This project serves as a comprehensive guide to performing football analysis using Python. You can view Live Demo :☆16Apr 14, 2023Updated 2 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆40Sep 16, 2025Updated 6 months ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 8 years ago
- create usable MS-Word web-pages☆14Aug 11, 2025Updated 7 months ago
- ☆13Apr 20, 2023Updated 2 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Jun 12, 2025Updated 9 months ago
- RNA-Seq workflow for Kids-First DRC☆12Sep 22, 2025Updated 6 months ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Oct 23, 2025Updated 5 months ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- A Python implementation of COMO-CMA-ES, a non-elitist multiobjective Evolution Strategy☆16Jan 24, 2026Updated 2 months ago
- ☆17Jul 6, 2025Updated 8 months ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 4 years ago
- ☆12Mar 4, 2021Updated 5 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- ☆22May 6, 2022Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Custom code for processing Parse Bio snRNA-seq data generated by the Mortazavi lab at UCI☆19Oct 5, 2025Updated 5 months ago
- A Python library for creating publication-ready plots with a fluent, chainable interface. Built on top of plotnine, it provides a pandas …☆25Apr 25, 2025Updated 11 months ago
- ☆14Jun 10, 2025Updated 9 months ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Jun 10, 2022Updated 3 years ago