BUStools / BUS_notebooks_pythonLinks
☆23Updated 6 years ago
Alternatives and similar repositories for BUS_notebooks_python
Users that are interested in BUS_notebooks_python are comparing it to the libraries listed below
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆55Updated 6 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- ☆55Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆34Updated 6 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated 11 months ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last week
- ☆38Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 3 months ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- ☆28Updated 6 years ago