BUStools / BUS_notebooks_python
☆23Updated 5 years ago
Alternatives and similar repositories for BUS_notebooks_python:
Users that are interested in BUS_notebooks_python are comparing it to the libraries listed below
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆46Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- ☆33Updated 5 years ago
- ☆62Updated 2 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆17Updated 6 years ago
- ☆28Updated 5 years ago
- ☆53Updated 3 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 6 months ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- Analysing Capture Seq Count Data☆14Updated 6 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- ☆36Updated 2 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆34Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- R package of techniques for comparing clusterings of single-cell sequencing data☆37Updated 9 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated last year