seandavi / SRAdbV2Links
R Interface to the NCBI SRA metadata
☆23Updated 7 years ago
Alternatives and similar repositories for SRAdbV2
Users that are interested in SRAdbV2 are comparing it to the libraries listed below
Sorting:
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 9 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Calculate and plot distributions of genomic ranges☆27Updated 8 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- R package to quickly obtain count vectors from indexed bam files☆15Updated 6 months ago
- Genomic plot in trellis layout☆42Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- ☆10Updated 10 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 months ago
- Allele frequency filter app☆14Updated 3 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 5 months ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago