mendessoares / MMinte
☆16Updated 2 years ago
Alternatives and similar repositories for MMinte:
Users that are interested in MMinte are comparing it to the libraries listed below
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 months ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆12Updated 4 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 5 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- ☆22Updated 2 years ago
- GTDB => NCBI☆13Updated 5 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- StrainFinder☆27Updated 6 years ago
- Robust Aitchison PCA from sparse count data☆34Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- Plot microbiome time series in parallel☆26Updated last year
- ☆20Updated 8 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- ☆29Updated 4 months ago
- Factorize metagenotypes to infer strains and their abundances☆12Updated 7 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆13Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆37Updated 8 months ago
- ☆32Updated last year
- ☆11Updated 5 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- MAG Circularization Method☆33Updated 2 years ago