The 3rd incarnation of the Wise package for sequence analysis
☆23Jun 19, 2014Updated 12 years ago
Alternatives and similar repositories for wise3
Users that are interested in wise3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 7 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 13 years ago
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 5 months ago
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 10 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆46Jul 28, 2019Updated 7 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Analysis of Ebola virus genomes☆17May 18, 2015Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Stupid Simple Structural Variant View☆26Nov 21, 2016Updated 9 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- Reference-based compression of SRA data☆40Mar 26, 2013Updated 13 years ago
- Software for nanopore data analysis☆29Sep 10, 2014Updated 12 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated 4 months ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆36Aug 13, 2020Updated 6 years ago
- Lightweight workflows in bioinformatics:☆24Nov 5, 2014Updated 11 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- ☆18Jul 9, 2018Updated 8 years ago
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 11 years ago
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 13 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- reference-guided aligner for next-generation sequencing technologies☆57Sep 20, 2016Updated 10 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 5 months ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago