birney / wise3Links
The 3rd incarnation of the Wise package for sequence analysis
☆22Updated 11 years ago
Alternatives and similar repositories for wise3
Users that are interested in wise3 are comparing it to the libraries listed below
Sorting:
- Python CLI for alignment-free genomics.☆12Updated last month
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- simple and not slow ORF caller☆21Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 3 months ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- 10x Genomics Reads Simulator☆45Updated last year
- reference free variant assembly☆34Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- ☆19Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Explore and analyze biological sequence data☆16Updated last year
- Perl scripts for working with the GFF format☆16Updated 14 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 6 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago