Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
☆56Jan 6, 2025Updated last year
Alternatives and similar repositories for Spatial_Glioma
Users that are interested in Spatial_Glioma are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- ☆11May 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆36Jan 23, 2024Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- ☆58Feb 23, 2024Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated last year
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- ☆33Feb 26, 2025Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Methods to discover gene programs on single-cell data☆188Updated this week
- ☆17Mar 27, 2023Updated 3 years ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆90Oct 9, 2024Updated last year
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆115Jun 9, 2025Updated 11 months ago
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 9 months ago
- Implementation of CellNEST method☆69May 11, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Mar 5, 2024Updated 2 years ago
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆54Jan 12, 2024Updated 2 years ago
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments☆24May 13, 2025Updated last year
- Create Regional Association Plots☆13Sep 7, 2025Updated 8 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆167May 6, 2025Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Apr 23, 2026Updated last month
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆19Sep 24, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆33Jul 13, 2024Updated last year
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Gene group activity utility functions for Scanpy☆105Dec 21, 2024Updated last year
- ☆14Apr 11, 2024Updated 2 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆132May 29, 2025Updated 11 months ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago