Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
☆24Jun 15, 2018Updated 7 years ago
Alternatives and similar repositories for tasic2018analysis
Users that are interested in tasic2018analysis are comparing it to the libraries listed below
Sorting:
- ☆48Mar 1, 2018Updated 8 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Sep 17, 2025Updated 5 months ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 6 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Dec 16, 2019Updated 6 years ago
- ☆17Jun 5, 2019Updated 6 years ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- ☆38Jan 21, 2026Updated last month
- ☆22May 6, 2022Updated 3 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated 9 months ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 4 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- ☆12Jan 15, 2021Updated 5 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- ☆28Feb 6, 2019Updated 7 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 4 months ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Introductory workshop to modeling and model fitting in psychophysics and neuroscience☆11May 9, 2019Updated 6 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Oct 31, 2018Updated 7 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Mar 5, 2024Updated last year
- Get insights from OrientDB database using PyOrient through IBM Watson Studio☆13Apr 22, 2019Updated 6 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 10 months ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆46Updated this week
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- ☆12Sep 8, 2020Updated 5 years ago
- ☆31Aug 4, 2023Updated 2 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- ☆13Mar 20, 2021Updated 4 years ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 5 years ago
- ☆12May 4, 2022Updated 3 years ago
- Auto-annotations from Mouse brain development☆13Jul 11, 2020Updated 5 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 7 years ago