AllenInstitute / tasic2018analysisLinks
Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
☆23Updated 7 years ago
Alternatives and similar repositories for tasic2018analysis
Users that are interested in tasic2018analysis are comparing it to the libraries listed below
Sorting:
- ☆48Updated 7 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 3 weeks ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 7 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆44Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- ☆29Updated 3 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- ☆48Updated last year
- Cytograph version used for adult human-brain analysis☆89Updated 3 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Human cortical cell types☆24Updated 6 years ago
- ☆63Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆24Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated last month
- Linear trajectory inference for single-cell RNA-seq☆61Updated last year
- Hierarchical classification of cells☆26Updated last year
- ☆55Updated 4 years ago
- An R-based interface for loom files☆67Updated 5 years ago