Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.
☆24Jun 15, 2018Updated 8 years ago
Alternatives and similar repositories for tasic2018analysis
Users that are interested in tasic2018analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆122Aug 20, 2025Updated last year
- Single cell RNA-seq analysis for transcriptomic type characterization☆43Apr 7, 2026Updated 5 months ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- ☆50Mar 1, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A method to rapidly assess cell type identity using both functional and random gene sets☆15May 2, 2019Updated 7 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Dec 16, 2019Updated 6 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆127Jun 28, 2021Updated 5 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 6 years ago
- computes intrinsic cell features from intracellular electrophysiology data☆31Aug 14, 2026Updated last month
- Repository for storing prototype functionality implementations for the BKP☆55Aug 14, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆31Aug 4, 2023Updated 3 years ago
- ☆17Jun 5, 2019Updated 7 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆40Aug 2, 2021Updated 5 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- ☆13Sep 8, 2020Updated 6 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- ☆22Mar 16, 2019Updated 7 years ago
- ☆25Jul 9, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆49Sep 18, 2025Updated last year
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Code to go along with Velasco et. al.☆11Jun 5, 2019Updated 7 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 3 years ago
- ☆40May 10, 2026Updated 4 months ago
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆121Updated this week
- ☆28Feb 6, 2019Updated 7 years ago
- ☆13Jan 15, 2021Updated 5 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Aug 20, 2026Updated last month
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- ☆15Sep 27, 2022Updated 3 years ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago