Alternatives and similar repositories for single-cell-explorer

Users that are interested in single-cell-explorer are comparing it to the libraries listed below

• theislab / multicpa
  ☆15Updated 3 years ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆47Updated this week
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆50Updated 6 months ago
• laminlabs / bionty
  Registries for basic biological entities, coupled to public ontologies.
  ☆18Updated this week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆99Updated 2 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆105Updated this week
• theislab / scTab
  ☆59Updated 10 months ago
• scverse / squidpy_notebooks
  Tutorials for Squidpy
  ☆33Updated this week
• lilab-bcb / harmony-pytorch
  ☆55Updated 2 months ago
• theislab / prophet
  ☆35Updated 3 months ago
• czi-ai / transcriptformer
  ☆62Updated last week
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆64Updated last month
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 8 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆46Updated 11 months ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆97Updated this week
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆77Updated last month
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated 3 weeks ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆53Updated this week
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆15Updated 9 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 10 months ago
• scverse / spatialdata-notebooks
  ☆54Updated this week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆81Updated 2 weeks ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆24Updated 4 months ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆29Updated last month
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆59Updated 9 months ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 5 months ago
• zcang / SpaOTsc
  ☆45Updated 2 weeks ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆35Updated last year
• nitzanlab / biolord
  ☆80Updated 11 months ago