chanzuckerberg / single-cell-explorerView external linksLinks
Hosted version of cellxgene
☆22Feb 8, 2026Updated last week
Alternatives and similar repositories for single-cell-explorer
Users that are interested in single-cell-explorer are comparing it to the libraries listed below
Sorting:
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆13Dec 6, 2025Updated 2 months ago
- The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.☆87Updated this week
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 3 years ago
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 2 years ago
- Code and documentation for the curation of cellxgene datasets☆53Feb 8, 2026Updated last week
- CryoET Data Portal☆26Updated this week
- 🪝 What's the latest version for each database?☆28Updated this week
- CZ CELLxGENE Discover Census☆117Jan 14, 2026Updated last month
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆83Jan 23, 2026Updated 3 weeks ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Jan 29, 2025Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Jan 27, 2026Updated 2 weeks ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆12Updated this week
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- This is an R package to retrieve data from Open Target☆15Jul 25, 2025Updated 6 months ago
- auto-generating summaries of interactive and dynamic geovisualization☆11Dec 9, 2024Updated last year
- Implementation of multiplex Leiden for analysis of spatial omics data☆17Feb 2, 2026Updated last week
- ☆10Aug 28, 2025Updated 5 months ago
- Collation of metadata examples and notes for the project☆11Jan 30, 2026Updated 2 weeks ago
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 3 years ago
- A Generative Adversarial Network Model Alternative to Animal Studies for Clinical Pathology Assessment☆14Jan 10, 2024Updated 2 years ago
- Store collections of experimental data based on TileDB☆12Updated this week
- Connectome File Format Library for Multi-Modal Neuroimaging Data and Metadata☆13Jan 14, 2019Updated 7 years ago
- JIRA OSLC plugin is a JIRA add-on. Main role of this plugin is extend JIRA functionalities to provide establishing and removing OSLC link…☆10Aug 29, 2017Updated 8 years ago
- ☆44Oct 24, 2025Updated 3 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- Extensible birpc interfaces☆20Feb 4, 2026Updated last week
- Binding Affinity Prediction using Deep learning models☆12Jun 9, 2021Updated 4 years ago
- Trusty URI specification☆20Feb 23, 2015Updated 10 years ago
- 3D point cloud registration tool☆10Feb 8, 2021Updated 5 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- A lightweight Express.js middleware to help you implement feature flags.☆14Aug 17, 2025Updated 5 months ago
- ☆11Oct 19, 2024Updated last year
- ☆11Dec 2, 2022Updated 3 years ago
- A D3 layout that places labels avoiding overlaps using either a greedy or simulated annealing strategy☆10Oct 16, 2017Updated 8 years ago
- WebGL Renderer extension for Vega☆13Dec 10, 2021Updated 4 years ago
- typescript web framework, written in rust☆14Dec 9, 2025Updated 2 months ago
- A public catalog of Benchling App examples written in Python.☆17Jan 7, 2026Updated last month
- Attempt to use Web Workers to run echarts☆11Jun 11, 2023Updated 2 years ago
- WebSocketStream Polyfill☆11Apr 5, 2024Updated last year