chanzuckerberg / single-cell-explorerLinks
Hosted version of cellxgene
☆16Updated this week
Alternatives and similar repositories for single-cell-explorer
Users that are interested in single-cell-explorer are comparing it to the libraries listed below
Sorting:
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆24Updated last month
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 7 months ago
- ☆14Updated 2 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆62Updated last week
- ☆34Updated last month
- Code and documentation for the curation of cellxgene datasets☆46Updated this week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last week
- An R package for performing cell typing in SMI and other single cell data☆37Updated last month
- ☆59Updated 9 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆57Updated 2 weeks ago
- Create PyTorch Datasets from AnnData☆20Updated 3 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 4 months ago
- Registries for biological entities, coupled to public ontologies.☆16Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated this week
- Hotspot cluster distance analysis in spatial transcriptomic data☆28Updated 4 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated 6 months ago
- Multi-modal single cell analysis pipelines☆59Updated 2 months ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month
- CZ CELLxGENE Discover Census☆103Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated 2 months ago
- ☆53Updated last week
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆64Updated last year
- ☆53Updated last year
- Single-cell multi-omics integration using Optimal Transport☆45Updated 9 months ago
- ☆44Updated last week
- ☆51Updated 2 weeks ago
- Slides and Notebooks for scverse 2024☆17Updated 9 months ago
- ☆22Updated 2 years ago
- ☆17Updated last month