Hosted version of cellxgene
☆20May 21, 2026Updated last week
Alternatives and similar repositories for single-cell-explorer
Users that are interested in single-cell-explorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆15Apr 30, 2026Updated last month
- The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.☆91Updated this week
- Fast streams for block gzip files.☆14Nov 11, 2025Updated 6 months ago
- Happy Path Deployment Tool☆19Feb 10, 2026Updated 3 months ago
- CryoET Data Portal☆31May 22, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CZ CELLxGENE Discover Census☆124Jan 14, 2026Updated 4 months ago
- Code and documentation for the curation of cellxgene datasets☆56May 22, 2026Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Apr 20, 2026Updated last month
- ☆20Mar 13, 2026Updated 2 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆43Dec 18, 2025Updated 5 months ago
- Package generating elasticsearch mapping from jsonschemas☆14Jul 31, 2019Updated 6 years ago
- Haplotype-aware assembly of complex regions and small genomes☆15May 21, 2026Updated last week
- ☆11Jul 8, 2024Updated last year
- 🪝 What's the latest version for each database?☆29Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Jan 29, 2025Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- AWS OIDC Federation☆20Updated this week
- ☆46Feb 13, 2026Updated 3 months ago
- A pipeline to transform images into valuable analysis items☆19May 19, 2026Updated last week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆70Apr 24, 2026Updated last month
- Implementation of multiplex Leiden for analysis of spatial omics data☆18May 7, 2026Updated 3 weeks ago
- 3D point cloud registration tool☆11Feb 8, 2021Updated 5 years ago
- TileDB integrations for machine learning data and model i/o (PyTorch, TensorFlow, Scikit-Learn)☆26Dec 4, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆15Nov 3, 2025Updated 6 months ago
- SOMA PyTorch loaders☆14Sep 24, 2025Updated 8 months ago
- Create PyTorch Datasets from AnnData☆21Jan 6, 2026Updated 4 months ago
- factor models for omics data☆41May 20, 2026Updated last week
- ☆10Jan 17, 2023Updated 3 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- Hacking the HooToo HT-TM05☆27Mar 29, 2015Updated 11 years ago
- ☆12Oct 19, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is an R package to retrieve data from Open Target☆15Updated this week
- A Generative Adversarial Network Model Alternative to Animal Studies for Clinical Pathology Assessment☆17Jan 10, 2024Updated 2 years ago
- [ICLR 2022] "Bayesian Modeling and Uncertainty Quantification for Learning to Optimize: What, Why, and How" by Yuning You, Yue Cao, Tianl…☆14Aug 19, 2022Updated 3 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- ☆21Apr 1, 2026Updated last month
- Semantic point cloud segmentation with graph convolutional network☆10Dec 10, 2017Updated 8 years ago