stephenslab / gtexresults
Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions."
☆24Updated last year
Alternatives and similar repositories for gtexresults:
Users that are interested in gtexresults are comparing it to the libraries listed below
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 9 months ago
- software package for integrative genetic association analysis☆34Updated last year
- Code for implementing Mendelian randomization investigations☆16Updated 9 years ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 4 years ago
- Independent Hypothesis Weighting☆15Updated last year
- ☆10Updated 2 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- ☆14Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated last year
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- ☆11Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- haploR: utilities for mining Haploreg and other similar web-based tools☆9Updated 11 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- ☆20Updated 8 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Sample code for ldsc analyses in UKBB☆30Updated last year
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago